FMODB ID: XYJV2
Calculation Name: 1L2Y-A-MD50-90500ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -22451.934862 |
---|---|
FMO2-HF: Nuclear repulsion | 17849.738525 |
FMO2-HF: Total energy | -4602.196336 |
FMO2-MP2: Total energy | -4615.60077 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-71.132 | -61.221 | 6.904 | -7.697 | -9.118 | -0.07 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | -0.027 | -0.020 | 3.254 | -2.201 | -0.770 | 0.052 | -0.586 | -0.897 | -0.002 | |
4 | 4 | GLN | 0 | 0.066 | 0.050 | 2.438 | 5.130 | 6.280 | 0.496 | -0.469 | -1.177 | -0.001 | |
5 | 5 | GLN | 0 | -0.008 | -0.021 | 1.998 | -31.206 | -29.229 | 3.738 | -3.333 | -2.383 | -0.048 | |
6 | 6 | GLN | 0 | 0.028 | 0.026 | 2.302 | 2.441 | 5.496 | 1.950 | -1.798 | -3.206 | -0.002 | |
7 | 7 | GLN | 0 | -0.030 | -0.009 | 2.711 | -16.694 | -14.396 | 0.668 | -1.511 | -1.455 | -0.017 | |
8 | 8 | GLN | 0 | 0.008 | -0.010 | 5.499 | -3.245 | -3.245 | 0.000 | 0.000 | 0.000 | 0.000 | |
9 | 9 | GLN | 0 | -0.074 | -0.063 | 7.273 | 2.564 | 2.564 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.907 | -0.915 | 7.641 | -27.921 | -27.921 | 0.000 | 0.000 | 0.000 | 0.000 |