FMODB ID: XYMM2
Calculation Name: 1L2Y-A-MD50-62500ps
Preferred Name:
Target Type:
Ligand Name:
ligand 3-letter code:
PDB ID: 2OTU
Chain ID: A
UniProt ID: A2NN81
Base Structure: MD
Registration Date: 2019-08-09
Reference:
Modeling method
Optimization | BaseStructure_original |
---|---|
Restraint | BaseStructure_original |
Protonation | BaseStructure_original |
Complement | No |
Water | No |
Procedure | Manual calculation |
FMO calculation
FMO method | FMO2-MP2/6-31G(d) |
---|---|
Fragmentation | Auto |
Number of fragment | 10 |
LigandCharge | |
Software | MIZUHO/ABINIT-MP 3.0 |
Total energy (hartree)
FMO2-HF: Electronic energy | -22850.511654 |
---|---|
FMO2-HF: Nuclear repulsion | 18248.348345 |
FMO2-HF: Total energy | -4602.163309 |
FMO2-MP2: Total energy | -4615.587782 |
3D Structure
Ligand structure
Ligand Interaction
Ligand binding energy
"IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
N/A | N/A | N/A | N/A | N/A | N/A |
Interactive mode: IFIE and PIEDA for fragment #1(:1:GLN )
Summations of interaction energy for
fragment #1(:1:GLN )
IFIE [kcal/mol] | PIEDA [kcal/mol] | Charge transfer value [e] | |||
---|---|---|---|---|---|
IFIE SUMIFIE SUM at MP2 level. | ESElectro static interaction energy. | EXExchange-repulsion energy. | CT+mixCharge transfer and mixing terms energy. | DI(MP2)Dispersion energy. | q(I=>J)Charge transfer value from I to J fragments. |
-46.556 | -39.515 | 5.328 | -4.411 | -7.96 | 0 |
Interaction energy analysis for fragmet #1(:1:GLN )
frag_NumFragment number. | ChainChain species. | Res #Residue number. | RES3-letter code of amino acid residue, ligand and solvent molecule. | FCHARGEFormal charge [e]. | q_MullikenFragment charge evaluated by Mulliken charge [e]. | q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. | DISTDistance from Ligand [Å]. | TotalIFIE at MP2 level [kcal/mol]. | ESElectro static interaction energy by PIEDA [kcal/mol]. | EXExchange-repulsion energy by PIEDA [kcal/mol]. | CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. | DI(MP2)Dispersion energy by PIEDA [kcal/mol]. | q(I=>J)Charge transfer value from I to J fragmens [e]. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 3 | GLN | 0 | -0.024 | -0.012 | 2.418 | 0.696 | 4.857 | 4.978 | -3.381 | -5.759 | 0.003 | |
4 | 4 | GLN | 0 | -0.010 | -0.006 | 3.665 | -5.851 | -5.325 | 0.009 | -0.216 | -0.319 | -0.001 | |
5 | 5 | GLN | 0 | 0.036 | 0.019 | 5.116 | -2.425 | -2.425 | 0.000 | 0.000 | 0.000 | 0.000 | |
6 | 6 | GLN | 0 | 0.048 | 0.024 | 3.193 | -11.734 | -10.827 | 0.139 | -0.343 | -0.703 | -0.002 | |
7 | 7 | GLN | 0 | -0.024 | -0.015 | 2.834 | -6.617 | -5.288 | 0.195 | -0.426 | -1.099 | 0.000 | |
8 | 8 | GLN | 0 | 0.021 | 0.002 | 3.981 | 3.807 | 3.925 | 0.007 | -0.045 | -0.080 | 0.000 | |
9 | 9 | GLN | 0 | -0.098 | -0.054 | 7.238 | -1.072 | -1.072 | 0.000 | 0.000 | 0.000 | 0.000 | |
10 | 10 | GLN | -1 | -0.906 | -0.928 | 6.639 | -23.360 | -23.360 | 0.000 | 0.000 | 0.000 | 0.000 |