FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: XYQ62

Calculation Name: 2AB0-A-Xray13

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2AB0

Chain ID: A

ChEMBL ID:

UniProt ID: Q46948

Base Structure: X-ray

Registration Date: 2017-12-04

Reference:

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement Missing residues were capped by ACE, NME. Missing atoms were corrected by Structure prepareation by MOE.
Water No
Procedure Auto-FMO protocol ver. 1.20181213
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 197
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software MIZUHO/ABINIT-MP 3.0
Total energy (hartree)
FMO2-HF: Electronic energy -2072179.312663
FMO2-HF: Nuclear repulsion 1999774.808331
FMO2-HF: Total energy -72404.504332
FMO2-MP2: Total energy -72616.402714


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:1:ACE)


Summations of interaction energy for fragment #1(A:1:ACE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
0.1331.74-0.018-0.737-0.851-0.002
Interaction energy analysis for fragmet #1(A:1:ACE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.011 / q_NPA : -0.009
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A3ALA00.0240.0623.812-0.1071.499-0.017-0.734-0.854-0.002
4A4SER0-0.019-0.0246.000-0.066-0.0660.0000.0000.0000.000
5A5ALA0-0.008-0.0049.1000.1080.1080.0000.0000.0000.000
6A6LEU00.0170.02712.407-0.012-0.0120.0000.0000.0000.000
7A7VAL0-0.024-0.02015.6550.0330.0330.0000.0000.0000.000
8A8CYS0-0.027-0.00118.135-0.008-0.0080.0000.0000.0000.000
9A9LEU0-0.005-0.01221.8100.0140.0140.0000.0000.0000.000
10A10ALA00.0540.02624.525-0.005-0.0050.0000.0000.0000.000
11A11PRO00.0200.00028.2960.0050.0050.0000.0000.0000.000
12A12GLY0-0.010-0.00531.4010.0020.0020.0000.0000.0000.000
13A13SER00.0410.00326.1900.0010.0010.0000.0000.0000.000
14A14GLU-1-0.908-0.96027.141-0.006-0.0060.0000.0000.0000.000
15A15GLU-1-0.707-0.85525.667-0.022-0.0220.0000.0000.0000.000
16A16THR00.0090.00924.3950.0010.0010.0000.0000.0000.000
17A17GLU-1-0.764-0.88523.224-0.005-0.0050.0000.0000.0000.000
18A18ALA00.0050.00521.2190.0010.0010.0000.0000.0000.000
19A19VAL00.009-0.00219.676-0.006-0.0060.0000.0000.0000.000
20A20THR0-0.022-0.01519.0730.0050.0050.0000.0000.0000.000
21A21THR0-0.015-0.01716.2620.0160.0160.0000.0000.0000.000
22A22ILE0-0.0040.00115.2560.0040.0040.0000.0000.0000.000
23A23ASP-1-0.878-0.92414.1390.0340.0340.0000.0000.0000.000
24A24LEU00.007-0.01313.9490.0200.0200.0000.0000.0000.000
25A25LEU0-0.014-0.00610.9880.0470.0470.0000.0000.0000.000
26A26VAL00.0230.0189.4330.0200.0200.0000.0000.0000.000
27A27ARG10.8500.9289.529-0.058-0.0580.0000.0000.0000.000
28A28GLY0-0.009-0.0108.6950.0910.0910.0000.0000.0000.000
29A29GLY0-0.043-0.0265.2540.2970.2970.0000.0000.0000.000
30A30ILE0-0.054-0.0084.770-0.413-0.412-0.001-0.0030.0030.000
31A31LYS10.9640.9807.0010.7340.7340.0000.0000.0000.000
32A32VAL0-0.011-0.0158.9470.0070.0070.0000.0000.0000.000
33A33THR0-0.0150.00612.494-0.023-0.0230.0000.0000.0000.000
34A34THR0-0.014-0.00715.5160.0220.0220.0000.0000.0000.000
35A35ALA00.0500.01918.889-0.005-0.0050.0000.0000.0000.000
36A36SER0-0.051-0.02921.6760.0140.0140.0000.0000.0000.000
37A37VAL0-0.015-0.01924.910-0.005-0.0050.0000.0000.0000.000
38A38ALA0-0.008-0.02127.3690.0060.0060.0000.0000.0000.000
39A39SER0-0.006-0.00430.1010.0070.0070.0000.0000.0000.000
40A40ASP-1-0.930-0.95731.937-0.060-0.0600.0000.0000.0000.000
41A41GLY00.0070.00328.899-0.001-0.0010.0000.0000.0000.000
42A42ASN0-0.028-0.01029.090-0.006-0.0060.0000.0000.0000.000
43A43LEU00.0680.04624.8870.0010.0010.0000.0000.0000.000
44A44ALA0-0.038-0.00626.9050.0000.0000.0000.0000.0000.000
45A45ILE00.0120.00926.1430.0030.0030.0000.0000.0000.000
46A46THR0-0.044-0.02429.0770.0040.0040.0000.0000.0000.000
47A47CYS0-0.0020.01127.548-0.001-0.0010.0000.0000.0000.000
48A48SER0-0.062-0.03130.2620.0040.0040.0000.0000.0000.000
49A49ARG10.8600.90631.8620.0110.0110.0000.0000.0000.000
50A50GLY0-0.0070.00133.1900.0020.0020.0000.0000.0000.000
51A51VAL0-0.0030.00527.443-0.001-0.0010.0000.0000.0000.000
52A52LYS10.8920.94229.8140.0320.0320.0000.0000.0000.000
53A53LEU00.0150.00923.3500.0020.0020.0000.0000.0000.000
54A54LEU0-0.034-0.02124.8270.0020.0020.0000.0000.0000.000
55A55ALA0-0.013-0.00122.259-0.004-0.0040.0000.0000.0000.000
56A56ASP-1-0.832-0.91917.509-0.185-0.1850.0000.0000.0000.000
57A57ALA00.0070.00720.998-0.001-0.0010.0000.0000.0000.000
58A58PRO0-0.012-0.00822.7530.0070.0070.0000.0000.0000.000
59A59LEU00.0420.01522.262-0.010-0.0100.0000.0000.0000.000
60A60VAL0-0.041-0.03423.617-0.010-0.0100.0000.0000.0000.000
61A61GLU-1-0.936-0.96623.592-0.139-0.1390.0000.0000.0000.000
62A62VAL0-0.011-0.01018.674-0.016-0.0160.0000.0000.0000.000
63A63ALA0-0.048-0.02319.324-0.021-0.0210.0000.0000.0000.000
64A64ASP-1-0.947-0.96620.710-0.155-0.1550.0000.0000.0000.000
65A65GLY0-0.049-0.01516.952-0.013-0.0130.0000.0000.0000.000
66A66GLU-1-0.876-0.95712.581-0.344-0.3440.0000.0000.0000.000
67A67TYR0-0.064-0.02012.211-0.045-0.0450.0000.0000.0000.000
68A68ASP-1-0.826-0.9248.948-0.567-0.5670.0000.0000.0000.000
69A69VAL0-0.069-0.04112.1880.0790.0790.0000.0000.0000.000
70A70ILE00.0170.02414.583-0.029-0.0290.0000.0000.0000.000
71A71VAL0-0.015-0.01816.0850.0270.0270.0000.0000.0000.000
72A72LEU0-0.014-0.01318.865-0.006-0.0060.0000.0000.0000.000
73A73PRO00.002-0.01721.6810.0130.0130.0000.0000.0000.000
74A74GLY00.0570.04123.824-0.002-0.0020.0000.0000.0000.000
75A75GLY00.0090.00927.421-0.003-0.0030.0000.0000.0000.000
76A76ILE0-0.053-0.03230.473-0.003-0.0030.0000.0000.0000.000
77A77LYS10.9930.98833.3710.0190.0190.0000.0000.0000.000
78A78GLY00.0530.04729.727-0.003-0.0030.0000.0000.0000.000
79A79ALA00.016-0.00129.303-0.004-0.0040.0000.0000.0000.000
80A80GLU-1-0.894-0.97230.282-0.026-0.0260.0000.0000.0000.000
81A81CYS0-0.021-0.00531.034-0.002-0.0020.0000.0000.0000.000
82A82PHE0-0.046-0.03224.818-0.004-0.0040.0000.0000.0000.000
83A83ARG10.8240.89429.4820.0280.0280.0000.0000.0000.000
84A84ASP-1-0.792-0.86632.035-0.036-0.0360.0000.0000.0000.000
85A85SER0-0.0290.01029.111-0.002-0.0020.0000.0000.0000.000
86A86THR00.0450.00230.646-0.004-0.0040.0000.0000.0000.000
87A87LEU00.0670.04726.450-0.001-0.0010.0000.0000.0000.000
88A88LEU0-0.0130.00824.520-0.009-0.0090.0000.0000.0000.000
89A89VAL00.0230.00825.976-0.004-0.0040.0000.0000.0000.000
90A90GLU-1-0.889-0.95827.372-0.069-0.0690.0000.0000.0000.000
91A91THR0-0.018-0.01921.802-0.008-0.0080.0000.0000.0000.000
92A92VAL0-0.0080.00022.699-0.008-0.0080.0000.0000.0000.000
93A93LYS10.9000.95523.3350.0550.0550.0000.0000.0000.000
94A94GLN00.0640.04121.9020.0150.0150.0000.0000.0000.000
95A95PHE00.0210.00615.933-0.006-0.0060.0000.0000.0000.000
96A96HIS0-0.0320.00119.6830.0020.0020.0000.0000.0000.000
97A97ARG10.9170.96021.7970.0860.0860.0000.0000.0000.000
98A98SER0-0.080-0.04119.429-0.007-0.0070.0000.0000.0000.000
99A99GLY00.0070.01118.326-0.015-0.0150.0000.0000.0000.000
100A100ARG10.8390.92714.8180.2310.2310.0000.0000.0000.000
101A101ILE0-0.026-0.01113.7440.0270.0270.0000.0000.0000.000
102A102VAL00.0260.02417.158-0.020-0.0200.0000.0000.0000.000
103A103ALA00.0110.00317.7000.0190.0190.0000.0000.0000.000
104A104ALA0-0.0040.00119.731-0.010-0.0100.0000.0000.0000.000
105A105ILE0-0.0080.00422.6750.0100.0100.0000.0000.0000.000
106A106CYS0-0.050-0.02624.699-0.006-0.0060.0000.0000.0000.000
107A107ALA0-0.030-0.03128.2940.0010.0010.0000.0000.0000.000
108A108ALA00.0090.02126.063-0.001-0.0010.0000.0000.0000.000
109A109PRO00.0180.00226.377-0.004-0.0040.0000.0000.0000.000
110A110ALA00.0320.00728.678-0.002-0.0020.0000.0000.0000.000
111A111THR0-0.065-0.03231.5330.0000.0000.0000.0000.0000.000
112A112VAL0-0.002-0.00927.545-0.002-0.0020.0000.0000.0000.000
113A113LEU0-0.013-0.01425.468-0.002-0.0020.0000.0000.0000.000
114A114VAL00.0140.01829.5640.0000.0000.0000.0000.0000.000
115A115PRO0-0.073-0.02832.9600.0000.0000.0000.0000.0000.000
116A116HIS0-0.083-0.04231.5010.0000.0000.0000.0000.0000.000
117A117ASP-1-0.885-0.93332.917-0.026-0.0260.0000.0000.0000.000
118A118ILE0-0.068-0.03926.539-0.002-0.0020.0000.0000.0000.000
119A119PHE0-0.023-0.02723.281-0.002-0.0020.0000.0000.0000.000
120A120PRO00.0350.04429.0670.0050.0050.0000.0000.0000.000
121A121ILE00.0160.01930.6140.0040.0040.0000.0000.0000.000
122A122GLY0-0.040-0.02028.090-0.002-0.0020.0000.0000.0000.000
123A123ASN0-0.067-0.04127.521-0.004-0.0040.0000.0000.0000.000
124A124MET0-0.012-0.00727.123-0.002-0.0020.0000.0000.0000.000
125A125THR0-0.015-0.02226.5950.0020.0020.0000.0000.0000.000
126A126GLY00.0420.00928.308-0.005-0.0050.0000.0000.0000.000
127A127PHE0-0.041-0.02129.6080.0040.0040.0000.0000.0000.000
128A128PRO00.0470.02131.804-0.002-0.0020.0000.0000.0000.000
129A129THR0-0.038-0.02034.633-0.001-0.0010.0000.0000.0000.000
130A130LEU0-0.045-0.02633.438-0.002-0.0020.0000.0000.0000.000
131A131LYS10.9470.97035.357-0.008-0.0080.0000.0000.0000.000
132A132ASP-1-0.899-0.93836.3620.0010.0010.0000.0000.0000.000
133A133LYS10.8530.92336.2070.0090.0090.0000.0000.0000.000
134A134ILE0-0.0020.00631.371-0.003-0.0030.0000.0000.0000.000
135A135PRO00.0220.03634.3730.0020.0020.0000.0000.0000.000
136A136ALA00.0230.00435.9550.0020.0020.0000.0000.0000.000
137A137GLU-1-0.915-0.97135.9150.0000.0000.0000.0000.0000.000
138A138GLN0-0.053-0.04530.9710.0010.0010.0000.0000.0000.000
139A139TRP00.0030.00431.8550.0030.0030.0000.0000.0000.000
140A140LEU0-0.015-0.00629.0520.0040.0040.0000.0000.0000.000
141A141ASP-1-0.902-0.92831.1960.0200.0200.0000.0000.0000.000
142A142LYS10.9460.96227.619-0.047-0.0470.0000.0000.0000.000
143A143ARG10.8480.90625.438-0.054-0.0540.0000.0000.0000.000
144A144VAL00.0110.01020.577-0.004-0.0040.0000.0000.0000.000
145A145VAL0-0.018-0.00423.8950.0060.0060.0000.0000.0000.000
146A146TRP00.0440.01917.428-0.003-0.0030.0000.0000.0000.000
147A147ASP-1-0.751-0.85522.1440.0180.0180.0000.0000.0000.000
148A148ALA00.004-0.01020.185-0.007-0.0070.0000.0000.0000.000
149A149ARG10.8070.89221.286-0.021-0.0210.0000.0000.0000.000
150A150VAL00.0190.00823.567-0.006-0.0060.0000.0000.0000.000
151A151LYS10.8750.94215.5680.0500.0500.0000.0000.0000.000
152A152LEU00.0460.04419.964-0.011-0.0110.0000.0000.0000.000
153A153LEU0-0.057-0.02717.1880.0140.0140.0000.0000.0000.000
154A154THR00.0370.02120.905-0.009-0.0090.0000.0000.0000.000
155A155SER00.013-0.02422.6800.0120.0120.0000.0000.0000.000
156A156GLN00.0220.00924.733-0.004-0.0040.0000.0000.0000.000
157A157GLY00.032-0.00226.774-0.005-0.0050.0000.0000.0000.000
158A158PRO00.0370.02426.1990.0040.0040.0000.0000.0000.000
159A159GLY0-0.0020.00125.7000.0030.0030.0000.0000.0000.000
160A160THR0-0.034-0.02024.6400.0050.0050.0000.0000.0000.000
161A161ALA00.0340.02521.5260.0040.0040.0000.0000.0000.000
162A162ILE00.0500.02219.3160.0020.0020.0000.0000.0000.000
163A163ASP-1-0.764-0.87318.7780.0790.0790.0000.0000.0000.000
164A164PHE0-0.058-0.02919.0790.0120.0120.0000.0000.0000.000
165A165GLY00.0540.02415.8980.0000.0000.0000.0000.0000.000
166A166LEU00.000-0.00914.3100.0200.0200.0000.0000.0000.000
167A167LYS10.8230.92414.415-0.102-0.1020.0000.0000.0000.000
168A168ILE00.0180.00411.7960.0110.0110.0000.0000.0000.000
169A169ILE00.0280.0159.2200.0080.0080.0000.0000.0000.000
170A170ASP-1-0.861-0.93210.1120.3270.3270.0000.0000.0000.000
171A171LEU0-0.099-0.04611.8710.0330.0330.0000.0000.0000.000
172A172LEU0-0.039-0.0218.251-0.015-0.0150.0000.0000.0000.000
173A173VAL0-0.039-0.0045.1390.0330.0330.0000.0000.0000.000
174A174GLY00.0370.0247.1630.1940.1940.0000.0000.0000.000
175A175ARG10.9070.95110.199-0.236-0.2360.0000.0000.0000.000
176A176GLU-1-0.949-0.96911.2920.7210.7210.0000.0000.0000.000
177A177LYS10.8920.9487.214-0.913-0.9130.0000.0000.0000.000
178A178ALA00.010-0.00210.238-0.086-0.0860.0000.0000.0000.000
179A179HIS0-0.043-0.02612.901-0.056-0.0560.0000.0000.0000.000
180A180GLU-1-0.808-0.89010.8810.6020.6020.0000.0000.0000.000
181A181VAL0-0.0020.00211.244-0.055-0.0550.0000.0000.0000.000
182A182ALA00.012-0.01213.980-0.044-0.0440.0000.0000.0000.000
183A183SER0-0.127-0.06616.633-0.032-0.0320.0000.0000.0000.000
184A184GLN0-0.044-0.02114.155-0.042-0.0420.0000.0000.0000.000
185A185LEU0-0.039-0.01717.167-0.020-0.0200.0000.0000.0000.000
186A186VAL0-0.046-0.01520.493-0.014-0.0140.0000.0000.0000.000
187A187MET0-0.0180.01820.723-0.008-0.0080.0000.0000.0000.000
188A188ALA00.0170.00024.012-0.001-0.0010.0000.0000.0000.000
189A189ALA00.0320.00426.3830.0050.0050.0000.0000.0000.000
190A190GLY0-0.054-0.02727.9920.0030.0030.0000.0000.0000.000
191A191ILE0-0.031-0.00122.057-0.002-0.0020.0000.0000.0000.000
192A192TYR0-0.0060.00519.7830.0080.0080.0000.0000.0000.000
193A193ASN00.0910.02819.6500.0080.0080.0000.0000.0000.000
194A194TYR00.0160.00016.4320.0190.0190.0000.0000.0000.000
195A195TYR0-0.032-0.03617.9670.0240.0240.0000.0000.0000.000
196A196GLU-1-0.895-0.93619.7450.1650.1650.0000.0000.0000.000
197A197NME0-0.058-0.00420.752-0.009-0.0090.0000.0000.0000.000