FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: Y9QV2

Calculation Name: 1ISE-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 1ISE

Chain ID: A

ChEMBL ID:

UniProt ID: P0A805

Base Structure: X-ray

Registration Date: 2025-07-11

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 353
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1719644.325418
FMO2-HF: Nuclear repulsion 1648032.638443
FMO2-HF: Total energy -71611.686975
FMO2-MP2: Total energy -71819.80191


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:ILE)


Summations of interaction energy for fragment #1(A:2:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-5.366-9.79713.804-2.725-6.6510.032
Interaction energy analysis for fragmet #1(A:2:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.208 / q_NPA : 0.068
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A3SER0-0.0280.0554.656-0.973-0.736-0.001-0.102-0.1350.000
5A4ASP00.116-0.0983.810-0.5620.701-0.003-0.669-0.5900.004
6A4ASP-1-0.934-0.8225.2001.3501.443-0.001-0.004-0.0880.000
7A5ILE00.070-0.0892.6681.992-3.4770.0566.055-0.6430.001
8A5ILE0-0.0790.0941.6481.051-2.02212.904-6.687-3.1450.022
9A6ARG00.126-0.0863.196-2.259-1.2960.014-0.497-0.4800.002
10A6ARG10.8231.0423.9500.2780.3900.001-0.050-0.0630.000
11A7LYS00.150-0.0674.918-0.288-0.180-0.002-0.009-0.0970.000
12A7LYS10.8421.0727.754-0.781-0.7810.0000.0000.0000.000
13A8ASP00.001-0.1346.828-0.484-0.4840.0000.0000.0000.000
14A8ASP-1-0.851-0.8026.7242.0052.0050.0000.0000.0000.000
15A9ALA00.095-0.0857.063-0.258-0.2580.0000.0000.0000.000
16A9ALA0-0.0390.1136.9060.0000.0000.0000.0000.0000.000
17A10GLU00.130-0.1188.625-0.152-0.1520.0000.0000.0000.000
18A10GLU-1-1.050-0.85710.1230.1870.1870.0000.0000.0000.000
19A11VAL00.057-0.11210.919-0.127-0.1270.0000.0000.0000.000
20A11VAL0-0.1290.08011.857-0.002-0.0020.0000.0000.0000.000
21A12ARG00.065-0.09811.725-0.124-0.1240.0000.0000.0000.000
22A12ARG10.6530.9048.946-1.280-1.2800.0000.0000.0000.000
23A13MET00.043-0.11912.693-0.056-0.0560.0000.0000.0000.000
24A13MET0-0.0620.11610.696-0.029-0.0290.0000.0000.0000.000
25A14ASP00.106-0.09614.476-0.056-0.0560.0000.0000.0000.000
26A14ASP-1-0.946-0.81015.6520.2350.2350.0000.0000.0000.000
27A15LYS00.094-0.09616.333-0.056-0.0560.0000.0000.0000.000
28A15LYS10.8281.04415.995-0.422-0.4220.0000.0000.0000.000
29A16CYS00.051-0.12217.481-0.032-0.0320.0000.0000.0000.000
30A16CYS0-0.1180.08316.5580.0040.0040.0000.0000.0000.000
31A17VAL00.070-0.08818.794-0.025-0.0250.0000.0000.0000.000
32A17VAL0-0.0750.10118.431-0.004-0.0040.0000.0000.0000.000
33A18GLU00.051-0.12320.696-0.029-0.0290.0000.0000.0000.000
34A18GLU-1-0.847-0.74721.0580.1640.1640.0000.0000.0000.000
35A19ALA00.079-0.10221.949-0.026-0.0260.0000.0000.0000.000
36A19ALA0-0.0580.11522.2490.0050.0050.0000.0000.0000.000
37A20PHE00.075-0.08723.301-0.013-0.0130.0000.0000.0000.000
38A20PHE0-0.0720.09823.8190.0000.0000.0000.0000.0000.000
39A21LYS00.115-0.10625.160-0.014-0.0140.0000.0000.0000.000
40A21LYS10.7180.98424.438-0.145-0.1450.0000.0000.0000.000
41A22THR0-0.006-0.09926.679-0.016-0.0160.0000.0000.0000.000
42A22THR0-0.0820.05726.227-0.001-0.0010.0000.0000.0000.000
43A23GLN00.037-0.09628.033-0.010-0.0100.0000.0000.0000.000
44A23GLN0-0.1300.04626.5760.0140.0140.0000.0000.0000.000
45A24ILE00.087-0.09529.418-0.007-0.0070.0000.0000.0000.000
46A24ILE0-0.0840.11529.042-0.003-0.0030.0000.0000.0000.000
47A25SER00.005-0.12731.195-0.011-0.0110.0000.0000.0000.000
48A25SER0-0.0070.09732.0600.0030.0030.0000.0000.0000.000
49A26LYS00.072-0.10233.152-0.008-0.0080.0000.0000.0000.000
50A26LYS10.8671.07631.299-0.140-0.1400.0000.0000.0000.000
51A27ILE00.081-0.09034.991-0.003-0.0030.0000.0000.0000.000
52A27ILE0-0.1110.11333.595-0.002-0.0020.0000.0000.0000.000
53A28ARG00.138-0.09836.780-0.001-0.0010.0000.0000.0000.000
54A28ARG10.7520.98541.177-0.068-0.0680.0000.0000.0000.000
55A29THR00.011-0.06040.1750.0000.0000.0000.0000.0000.000
56A29THR0-0.1220.00138.370-0.001-0.0010.0000.0000.0000.000
57A30GLY00.021-0.11641.271-0.001-0.0010.0000.0000.0000.000
58A31ARG00.0370.01642.628-0.003-0.0030.0000.0000.0000.000
59A31ARG10.7831.00037.353-0.060-0.0600.0000.0000.0000.000
60A32ALA00.116-0.14442.2500.0050.0050.0000.0000.0000.000
61A32ALA0-0.0800.13444.766-0.001-0.0010.0000.0000.0000.000
62A33SER0-0.037-0.13539.233-0.003-0.0030.0000.0000.0000.000
63A33SER0-0.0410.10338.2270.0010.0010.0000.0000.0000.000
64A34PRO00.024-0.10239.1560.0030.0030.0000.0000.0000.000
65A35SER00.0350.03835.4440.0010.0010.0000.0000.0000.000
66A35SER0-0.0440.05234.2160.0020.0020.0000.0000.0000.000
67A36LEU00.138-0.08735.7240.0080.0080.0000.0000.0000.000
68A36LEU0-0.1190.10237.947-0.001-0.0010.0000.0000.0000.000
69A37LEU0-0.053-0.12737.8570.0040.0040.0000.0000.0000.000
70A37LEU0-0.0410.10040.857-0.001-0.0010.0000.0000.0000.000
71A38ASP00.091-0.13135.125-0.003-0.0030.0000.0000.0000.000
72A38ASP-1-0.859-0.74934.3440.1050.1050.0000.0000.0000.000
73A39GLY0-0.024-0.12335.6830.0040.0040.0000.0000.0000.000
74A40ILE00.0550.01836.3490.0040.0040.0000.0000.0000.000
75A40ILE0-0.0620.11140.338-0.001-0.0010.0000.0000.0000.000
76A41VAL00.061-0.11639.7590.0000.0000.0000.0000.0000.000
77A41VAL0-0.0760.10638.0590.0010.0010.0000.0000.0000.000
78A42VAL00.045-0.11941.026-0.001-0.0010.0000.0000.0000.000
79A42VAL0-0.0520.09644.016-0.001-0.0010.0000.0000.0000.000
80A43GLU00.105-0.12744.1880.0030.0030.0000.0000.0000.000
81A43GLU-1-0.992-0.81646.4990.0740.0740.0000.0000.0000.000
82A44TYR00.053-0.10745.544-0.004-0.0040.0000.0000.0000.000
83A44TYR0-0.0930.07645.5710.0000.0000.0000.0000.0000.000
84A45TYR00.010-0.11846.7930.0030.0030.0000.0000.0000.000
85A45TYR0-0.1060.10648.757-0.001-0.0010.0000.0000.0000.000
86A46GLY00.083-0.08947.9600.0010.0010.0000.0000.0000.000
87A47THR00.002-0.02143.9390.0030.0030.0000.0000.0000.000
88A47THR0-0.0100.10141.9280.0010.0010.0000.0000.0000.000
89A48PRO0-0.026-0.08939.991-0.003-0.0030.0000.0000.0000.000
90A49THR00.0210.00440.3420.0060.0060.0000.0000.0000.000
91A49THR0-0.0480.08341.473-0.001-0.0010.0000.0000.0000.000
92A50PRO00.023-0.09036.969-0.003-0.0030.0000.0000.0000.000
93A51LEU00.1630.02339.420-0.004-0.0040.0000.0000.0000.000
94A51LEU0-0.0750.12440.7000.0000.0000.0000.0000.0000.000
95A52ARG00.046-0.09538.944-0.006-0.0060.0000.0000.0000.000
96A52ARG10.7460.98334.987-0.105-0.1050.0000.0000.0000.000
97A53GLN00.069-0.08640.410-0.003-0.0030.0000.0000.0000.000
98A53GLN0-0.1010.07838.5750.0050.0050.0000.0000.0000.000
99A54LEU00.071-0.11841.984-0.002-0.0020.0000.0000.0000.000
100A54LEU0-0.0780.09944.1870.0000.0000.0000.0000.0000.000
101A55ALA00.085-0.06544.273-0.004-0.0040.0000.0000.0000.000
102A55ALA0-0.0670.07845.2980.0000.0000.0000.0000.0000.000
103A56SER00.055-0.08043.6430.0040.0040.0000.0000.0000.000
104A56SER0-0.0660.07343.982-0.002-0.0020.0000.0000.0000.000
105A57VAL00.051-0.11542.560-0.004-0.0040.0000.0000.0000.000
106A57VAL0-0.0640.11241.5920.0000.0000.0000.0000.0000.000
107A58THR0-0.051-0.09342.5380.0020.0020.0000.0000.0000.000
108A58THR0-0.0350.06944.258-0.002-0.0020.0000.0000.0000.000
109A59VAL00.151-0.10244.6570.0010.0010.0000.0000.0000.000
110A59VAL0-0.0880.11042.7870.0000.0000.0000.0000.0000.000
111A60GLU00.050-0.08445.719-0.002-0.0020.0000.0000.0000.000
112A60GLU-1-0.863-0.78549.9360.0400.0400.0000.0000.0000.000
113A61ASP00.073-0.06848.422-0.003-0.0030.0000.0000.0000.000
114A61ASP-1-0.862-0.80250.7970.0380.0380.0000.0000.0000.000
115A62SER00.040-0.11046.3640.0030.0030.0000.0000.0000.000
116A62SER0-0.0590.05746.169-0.001-0.0010.0000.0000.0000.000
117A63ARG0-0.037-0.11846.1270.0030.0030.0000.0000.0000.000
118A63ARG10.9141.09247.998-0.040-0.0400.0000.0000.0000.000
119A64THR00.030-0.08347.9910.0010.0010.0000.0000.0000.000
120A64THR0-0.0430.06050.2560.0000.0000.0000.0000.0000.000
121A65LEU00.105-0.06045.811-0.002-0.0020.0000.0000.0000.000
122A65LEU0-0.0820.09742.7510.0010.0010.0000.0000.0000.000
123A66LYS00.143-0.09246.643-0.001-0.0010.0000.0000.0000.000
124A66LYS10.7841.04648.385-0.043-0.0430.0000.0000.0000.000
125A67ILE00.020-0.11046.7140.0010.0010.0000.0000.0000.000
126A67ILE0-0.0800.11045.3340.0010.0010.0000.0000.0000.000
127A68ASN00.201-0.05847.777-0.001-0.0010.0000.0000.0000.000
128A68ASN0-0.1840.04248.816-0.002-0.0020.0000.0000.0000.000
129A69VAL00.110-0.10048.2210.0020.0020.0000.0000.0000.000
130A69VAL0-0.0980.10248.6630.0000.0000.0000.0000.0000.000
131A70PHE00.025-0.09848.583-0.004-0.0040.0000.0000.0000.000
132A70PHE0-0.0910.07544.337-0.001-0.0010.0000.0000.0000.000
133A71ASP00.154-0.09750.090-0.003-0.0030.0000.0000.0000.000
134A71ASP-1-0.915-0.76550.8970.0540.0540.0000.0000.0000.000
135A72ARG00.144-0.07452.2320.0020.0020.0000.0000.0000.000
136A72ARG10.8231.03156.004-0.040-0.0400.0000.0000.0000.000
137A73SER00.008-0.11054.8240.0000.0000.0000.0000.0000.000
138A73SER0-0.0520.06254.4910.0000.0000.0000.0000.0000.000
139A74MET00.042-0.12650.6450.0000.0000.0000.0000.0000.000
140A74MET0-0.1120.11848.2120.0000.0000.0000.0000.0000.000
141A75SER00.013-0.08450.6140.0030.0030.0000.0000.0000.000
142A75SER00.0090.07953.4990.0000.0000.0000.0000.0000.000
143A76PRO00.015-0.10651.7960.0010.0010.0000.0000.0000.000
144A77ALA00.080-0.00150.3310.0000.0000.0000.0000.0000.000
145A77ALA0-0.0520.11149.5070.0000.0000.0000.0000.0000.000
146A78VAL00.050-0.10247.3380.0030.0030.0000.0000.0000.000
147A78VAL0-0.0560.10146.5340.0000.0000.0000.0000.0000.000
148A79GLU00.148-0.10747.6060.0030.0030.0000.0000.0000.000
149A79GLU-1-0.887-0.77051.4460.0500.0500.0000.0000.0000.000
150A80LYS00.054-0.08249.8300.0000.0000.0000.0000.0000.000
151A80LYS10.8601.04550.052-0.065-0.0650.0000.0000.0000.000
152A81ALA00.034-0.13145.7450.0000.0000.0000.0000.0000.000
153A81ALA0-0.0470.12144.6820.0000.0000.0000.0000.0000.000
154A82ILE00.068-0.07844.7680.0050.0050.0000.0000.0000.000
155A82ILE0-0.0790.08144.4970.0000.0000.0000.0000.0000.000
156A83MET00.105-0.09245.6980.0030.0030.0000.0000.0000.000
157A83MET0-0.1060.09349.757-0.001-0.0010.0000.0000.0000.000
158A84ALA00.063-0.09646.759-0.001-0.0010.0000.0000.0000.000
159A84ALA0-0.0950.09146.1490.0000.0000.0000.0000.0000.000
160A85SER0-0.068-0.10442.5750.0020.0020.0000.0000.0000.000
161A85SER0-0.0470.04941.5230.0010.0010.0000.0000.0000.000
162A86ASP00.098-0.08942.4940.0040.0040.0000.0000.0000.000
163A86ASP-1-0.866-0.76543.2600.0720.0720.0000.0000.0000.000
164A87LEU00.113-0.07444.854-0.002-0.0020.0000.0000.0000.000
165A87LEU0-0.0910.09946.8590.0000.0000.0000.0000.0000.000
166A88GLY0-0.086-0.14846.866-0.003-0.0030.0000.0000.0000.000
167A89LEU00.019-0.02247.415-0.003-0.0030.0000.0000.0000.000
168A89LEU0-0.0670.10944.1340.0000.0000.0000.0000.0000.000
169A90ASN00.063-0.07848.5630.0010.0010.0000.0000.0000.000
170A90ASN0-0.1240.06451.845-0.001-0.0010.0000.0000.0000.000
171A91PRO0-0.012-0.12950.220-0.002-0.0020.0000.0000.0000.000
172A92ASN00.1690.05652.124-0.001-0.0010.0000.0000.0000.000
173A92ASN0-0.1610.04955.328-0.001-0.0010.0000.0000.0000.000
174A93SER00.054-0.06954.4900.0000.0000.0000.0000.0000.000
175A93SER0-0.0550.05754.2880.0000.0000.0000.0000.0000.000
176A94ALA00.062-0.10155.851-0.001-0.0010.0000.0000.0000.000
177A94ALA0-0.0840.10658.0980.0000.0000.0000.0000.0000.000
178A95GLY0-0.031-0.13757.011-0.001-0.0010.0000.0000.0000.000
179A96SER0-0.015-0.00154.4300.0010.0010.0000.0000.0000.000
180A96SER00.0210.10853.448-0.001-0.0010.0000.0000.0000.000
181A97ASP00.086-0.06652.2560.0030.0030.0000.0000.0000.000
182A97ASP-1-0.917-0.84753.3440.0410.0410.0000.0000.0000.000
183A98ILE00.057-0.08850.985-0.002-0.0020.0000.0000.0000.000
184A98ILE0-0.0860.10249.5350.0010.0010.0000.0000.0000.000
185A99ARG00.146-0.08150.2080.0020.0020.0000.0000.0000.000
186A99ARG10.7190.97552.302-0.039-0.0390.0000.0000.0000.000
187A100VAL00.055-0.12448.182-0.001-0.0010.0000.0000.0000.000
188A100VAL0-0.0830.10646.8080.0010.0010.0000.0000.0000.000
189A101PRO00.054-0.08148.1720.0010.0010.0000.0000.0000.000
190A102LEU00.052-0.05246.3080.0020.0020.0000.0000.0000.000
191A102LEU0-0.0810.14243.4470.0000.0000.0000.0000.0000.000
192A103PRO0-0.026-0.11346.951-0.003-0.0030.0000.0000.0000.000
193A104PRO0-0.023-0.00947.4140.0020.0020.0000.0000.0000.000
194A105LEU00.091-0.02945.469-0.001-0.0010.0000.0000.0000.000
195A105LEU0-0.0550.12642.2900.0000.0000.0000.0000.0000.000
196A106THR00.034-0.03546.940-0.003-0.0030.0000.0000.0000.000
197A106THR00.0000.05448.6090.0010.0010.0000.0000.0000.000
198A107GLU00.159-0.08046.5990.0030.0030.0000.0000.0000.000
199A107GLU-1-0.912-0.79646.6800.0420.0420.0000.0000.0000.000
200A108GLU00.055-0.15145.7680.0020.0020.0000.0000.0000.000
201A108GLU-1-0.875-0.77946.9510.0500.0500.0000.0000.0000.000
202A109ARG00.113-0.08244.5440.0030.0030.0000.0000.0000.000
203A109ARG10.8671.08741.751-0.073-0.0730.0000.0000.0000.000
204A110ARG00.080-0.12942.1910.0050.0050.0000.0000.0000.000
205A110ARG10.7951.05642.681-0.045-0.0450.0000.0000.0000.000
206A111LYS00.088-0.05740.7090.0040.0040.0000.0000.0000.000
207A111LYS10.7220.98042.576-0.050-0.0500.0000.0000.0000.000
208A112ASP00.054-0.13439.9200.0030.0030.0000.0000.0000.000
209A112ASP-1-0.917-0.79541.7920.0690.0690.0000.0000.0000.000
210A113LEU00.037-0.11838.5680.0060.0060.0000.0000.0000.000
211A113LEU0-0.0390.11238.7340.0000.0000.0000.0000.0000.000
212A114THR00.066-0.09136.5930.0070.0070.0000.0000.0000.000
213A114THR0-0.0620.06136.244-0.001-0.0010.0000.0000.0000.000
214A115LYS00.028-0.10335.1160.0040.0040.0000.0000.0000.000
215A115LYS10.7870.99436.815-0.069-0.0690.0000.0000.0000.000
216A116ILE00.069-0.06734.1000.0060.0060.0000.0000.0000.000
217A116ILE0-0.0760.10134.1790.0000.0000.0000.0000.0000.000
218A117VAL00.140-0.08132.0140.0110.0110.0000.0000.0000.000
219A117VAL0-0.0910.09231.3560.0000.0000.0000.0000.0000.000
220A118ARG00.082-0.09930.3510.0100.0100.0000.0000.0000.000
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