FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-07-23

All entries: 37450

Number of unique PDB entries: 7783

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FMODB ID: YVYY2

Calculation Name: 5HAW-A-Xray372

Preferred Name: Cell division protein ftsZ

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 5HAW

Chain ID: A

ChEMBL ID: CHEMBL3999

UniProt ID: P0A9A6

Base Structure: X-ray

Registration Date: 2023-09-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 190
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2156819.376629
FMO2-HF: Nuclear repulsion 2079726.810599
FMO2-HF: Total energy -77092.56603
FMO2-MP2: Total energy -77319.382066


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:7:ILE)


Summations of interaction energy for fragment #1(A:7:ILE)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-12.288-7.7343.727-3.278-5.0040.01
Interaction energy analysis for fragmet #1(A:7:ILE)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.008 / q_NPA : -0.006
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A9ARG11.0101.0143.652-3.549-1.233-0.005-1.017-1.2940.003
4A10ARG10.9480.9652.100-3.070-2.6623.618-1.664-2.3630.011
5A11GLU-1-0.910-0.9652.986-5.127-3.4880.114-0.569-1.184-0.004
6A12GLU-1-0.882-0.9374.2830.5380.7290.000-0.028-0.1630.000
7A13ILE0-0.046-0.0186.894-0.213-0.2130.0000.0000.0000.000
8A14LEU0-0.029-0.0135.721-0.138-0.1380.0000.0000.0000.000
9A15GLN00.0490.0228.262-0.121-0.1210.0000.0000.0000.000
10A16ALA00.0280.02210.227-0.015-0.0150.0000.0000.0000.000
11A17LEU0-0.050-0.03211.665-0.031-0.0310.0000.0000.0000.000
12A18ALA0-0.002-0.01412.510-0.028-0.0280.0000.0000.0000.000
13A19GLU-1-0.847-0.91914.2490.0300.0300.0000.0000.0000.000
14A20MET0-0.050-0.01516.2220.0190.0190.0000.0000.0000.000
15A21LEU0-0.062-0.03215.991-0.009-0.0090.0000.0000.0000.000
16A22GLU-1-0.869-0.93018.661-0.102-0.1020.0000.0000.0000.000
17A23SER00.0110.02520.392-0.003-0.0030.0000.0000.0000.000
18A24ASN00.046-0.00322.695-0.003-0.0030.0000.0000.0000.000
19A25GLU-1-0.938-0.97120.7630.1330.1330.0000.0000.0000.000
20A26GLY0-0.0040.01221.5220.0120.0120.0000.0000.0000.000
21A27ALA0-0.046-0.01022.358-0.003-0.0030.0000.0000.0000.000
22A28SER0-0.083-0.04724.4980.0010.0010.0000.0000.0000.000
23A29ARG10.9560.98522.605-0.158-0.1580.0000.0000.0000.000
24A30ILE00.0750.04617.1950.0060.0060.0000.0000.0000.000
25A31THR0-0.059-0.04019.2520.0250.0250.0000.0000.0000.000
26A32THR00.024-0.02916.966-0.001-0.0010.0000.0000.0000.000
27A33ALA00.0200.01918.0350.0300.0300.0000.0000.0000.000
28A34LYS10.9320.96220.109-0.144-0.1440.0000.0000.0000.000
29A35LEU00.0660.03512.673-0.003-0.0030.0000.0000.0000.000
30A36ALA0-0.014-0.00915.2040.0310.0310.0000.0000.0000.000
31A37LYS10.9520.97316.263-0.182-0.1820.0000.0000.0000.000
32A38GLN0-0.038-0.00715.224-0.007-0.0070.0000.0000.0000.000
33A39VAL0-0.026-0.01311.2130.0100.0100.0000.0000.0000.000
34A40GLY0-0.0010.02213.9020.0170.0170.0000.0000.0000.000
35A41VAL0-0.071-0.03912.7130.0470.0470.0000.0000.0000.000
36A42SER00.0180.00715.876-0.032-0.0320.0000.0000.0000.000
37A43GLU-1-0.779-0.90115.9040.4160.4160.0000.0000.0000.000
38A44ALA0-0.011-0.00515.9590.0610.0610.0000.0000.0000.000
39A45ALA0-0.015-0.00612.8060.0710.0710.0000.0000.0000.000
40A46LEU00.0240.00811.3280.2540.2540.0000.0000.0000.000
41A47TYR0-0.009-0.01610.9970.1720.1720.0000.0000.0000.000
42A48ARG10.9070.9799.898-1.033-1.0330.0000.0000.0000.000
43A49HIS0-0.047-0.0346.0210.4840.4840.0000.0000.0000.000
44A50PHE0-0.011-0.0026.2260.1040.1040.0000.0000.0000.000
45A51PRO00.0190.01210.285-0.081-0.0810.0000.0000.0000.000
46A52SER00.022-0.00413.279-0.073-0.0730.0000.0000.0000.000
47A53LYS10.9170.93713.454-0.213-0.2130.0000.0000.0000.000
48A54THR00.0440.01114.438-0.022-0.0220.0000.0000.0000.000
49A55ARG10.9740.98211.371-0.417-0.4170.0000.0000.0000.000
50A56MET0-0.0310.01810.019-0.038-0.0380.0000.0000.0000.000
51A57PHE00.0480.01111.054-0.076-0.0760.0000.0000.0000.000
52A58GLU-1-0.830-0.90512.9310.1290.1290.0000.0000.0000.000
53A59GLY00.0040.0209.019-0.058-0.0580.0000.0000.0000.000
54A60LEU0-0.005-0.0069.823-0.129-0.1290.0000.0000.0000.000
55A61ILE0-0.008-0.01511.961-0.054-0.0540.0000.0000.0000.000
56A62GLU-1-0.944-0.97010.562-0.100-0.1000.0000.0000.0000.000
57A63PHE00.0090.01610.667-0.041-0.0410.0000.0000.0000.000
58A64ILE0-0.002-0.00612.468-0.012-0.0120.0000.0000.0000.000
59A65GLU-1-0.861-0.92815.995-0.096-0.0960.0000.0000.0000.000
60A66GLU-1-0.906-0.94413.373-0.341-0.3410.0000.0000.0000.000
61A67SER0-0.058-0.02514.321-0.017-0.0170.0000.0000.0000.000
62A68LEU00.0110.00416.5160.0100.0100.0000.0000.0000.000
63A69MET0-0.003-0.00319.6650.0120.0120.0000.0000.0000.000
64A70SER0-0.038-0.00817.5300.0090.0090.0000.0000.0000.000
65A71ARG10.8650.92316.1010.3580.3580.0000.0000.0000.000
66A72ILE00.0430.01722.0250.0130.0130.0000.0000.0000.000
67A73ASN00.006-0.00122.5460.0230.0230.0000.0000.0000.000
68A74ARG10.9651.00519.3620.2810.2810.0000.0000.0000.000
69A75ILE0-0.012-0.00125.2710.0090.0090.0000.0000.0000.000
70A76PHE0-0.052-0.02227.9860.0100.0100.0000.0000.0000.000
71A77ASP-1-0.872-0.93627.436-0.137-0.1370.0000.0000.0000.000
72A78GLU-1-0.990-1.00026.192-0.194-0.1940.0000.0000.0000.000
73A79GLU-1-0.932-0.96330.290-0.121-0.1210.0000.0000.0000.000
74A80LYS10.8490.91532.5730.1270.1270.0000.0000.0000.000
75A81ASP-1-0.816-0.91036.055-0.074-0.0740.0000.0000.0000.000
76A82THR0-0.006-0.03936.302-0.004-0.0040.0000.0000.0000.000
77A83LEU0-0.024-0.01936.536-0.002-0.0020.0000.0000.0000.000
78A84ASN0-0.056-0.03134.173-0.001-0.0010.0000.0000.0000.000
79A85ARG10.8350.91432.3680.0940.0940.0000.0000.0000.000
80A86ILE00.0000.00231.707-0.005-0.0050.0000.0000.0000.000
81A87ARG10.9600.98832.4950.1030.1030.0000.0000.0000.000
82A88LEU00.0100.00329.020-0.003-0.0030.0000.0000.0000.000
83A89VAL00.0240.01927.612-0.009-0.0090.0000.0000.0000.000
84A90MET0-0.042-0.01627.835-0.003-0.0030.0000.0000.0000.000
85A91GLN0-0.003-0.00527.670-0.005-0.0050.0000.0000.0000.000
86A92LEU00.0080.01021.835-0.008-0.0080.0000.0000.0000.000
87A93LEU0-0.017-0.00824.142-0.009-0.0090.0000.0000.0000.000
88A94LEU0-0.020-0.00524.8870.0010.0010.0000.0000.0000.000
89A95ALA00.0340.00825.1510.0030.0030.0000.0000.0000.000
90A96PHE0-0.037-0.00916.863-0.011-0.0110.0000.0000.0000.000
91A97ALA00.0320.01021.115-0.006-0.0060.0000.0000.0000.000
92A98GLU-1-0.837-0.90222.798-0.091-0.0910.0000.0000.0000.000
93A99ARG10.8920.95617.7600.2390.2390.0000.0000.0000.000
94A100ASN0-0.070-0.04416.836-0.041-0.0410.0000.0000.0000.000
95A101PRO00.0840.04919.3920.0140.0140.0000.0000.0000.000
96A102GLY00.0380.00818.3490.0150.0150.0000.0000.0000.000
97A103LEU00.008-0.00613.9020.0230.0230.0000.0000.0000.000
98A104THR00.0230.01717.9430.0060.0060.0000.0000.0000.000
99A105ARG10.8480.91720.974-0.007-0.0070.0000.0000.0000.000
100A106ILE0-0.042-0.01616.0400.0180.0180.0000.0000.0000.000
101A107LEU00.0050.00220.1790.0060.0060.0000.0000.0000.000
102A108SER0-0.0190.01322.1120.0080.0080.0000.0000.0000.000
103A109GLY00.0260.01923.5200.0050.0050.0000.0000.0000.000
104A110HIS0-0.037-0.04924.6350.0150.0150.0000.0000.0000.000
105A111ALA00.0160.00320.2680.0120.0120.0000.0000.0000.000
106A112LEU0-0.012-0.01218.4620.0220.0220.0000.0000.0000.000
107A113MET0-0.0200.01021.9590.0090.0090.0000.0000.0000.000
108A114PHE0-0.055-0.02422.3790.0090.0090.0000.0000.0000.000
109A115GLU-1-0.877-0.92218.7090.2400.2400.0000.0000.0000.000
110A116ASN00.002-0.01720.903-0.016-0.0160.0000.0000.0000.000
111A117GLU-1-0.894-0.95622.0640.0630.0630.0000.0000.0000.000
112A118ARG10.8630.92816.458-0.176-0.1760.0000.0000.0000.000
113A119LEU0-0.074-0.03516.986-0.008-0.0080.0000.0000.0000.000
114A120ARG10.9630.97520.354-0.084-0.0840.0000.0000.0000.000
115A121ASP-1-0.855-0.91323.3860.0280.0280.0000.0000.0000.000
116A122ARG10.8200.89814.6990.0180.0180.0000.0000.0000.000
117A123ILE0-0.0090.00219.168-0.019-0.0190.0000.0000.0000.000
118A124ASN00.0280.00522.228-0.016-0.0160.0000.0000.0000.000
119A125GLN0-0.030-0.01422.785-0.012-0.0120.0000.0000.0000.000
120A126LEU0-0.0230.00019.752-0.012-0.0120.0000.0000.0000.000
121A127PHE00.0560.01223.126-0.013-0.0130.0000.0000.0000.000
122A128GLU-1-0.787-0.88026.354-0.047-0.0470.0000.0000.0000.000
123A129ARG10.9260.96319.7880.1230.1230.0000.0000.0000.000
124A130ILE00.0140.00423.670-0.007-0.0070.0000.0000.0000.000
125A131GLU-1-0.853-0.94027.295-0.044-0.0440.0000.0000.0000.000
126A132THR0-0.064-0.04429.5010.0030.0030.0000.0000.0000.000
127A133SER00.000-0.00327.879-0.003-0.0030.0000.0000.0000.000
128A134LEU00.0030.00430.3380.0000.0000.0000.0000.0000.000
129A135ARG10.8310.92232.8660.0500.0500.0000.0000.0000.000
130A136GLN0-0.050-0.02431.516-0.002-0.0020.0000.0000.0000.000
131A137ILE00.0100.01231.0230.0010.0010.0000.0000.0000.000
132A138LEU0-0.021-0.00535.1440.0020.0020.0000.0000.0000.000
133A139ARG10.9310.95436.9170.0520.0520.0000.0000.0000.000
134A140GLU-1-0.822-0.88835.885-0.083-0.0830.0000.0000.0000.000
135A141ARG10.9190.97939.7300.0590.0590.0000.0000.0000.000
136A142LYS10.8900.94642.1320.0470.0470.0000.0000.0000.000
137A142LEU0-0.022-0.01241.2020.0020.0020.0000.0000.0000.000
138A142ARG10.8360.91336.0240.0880.0880.0000.0000.0000.000
139A142GLU-1-0.805-0.88340.996-0.070-0.0700.0000.0000.0000.000
140A142GLY0-0.0050.00545.2370.0020.0020.0000.0000.0000.000
141A143LYS10.9130.97046.9260.0530.0530.0000.0000.0000.000
142A148SER0-0.011-0.01546.410-0.002-0.0020.0000.0000.0000.000
143A149PHE00.0070.00740.840-0.001-0.0010.0000.0000.0000.000
144A150PRO0-0.090-0.03745.7990.0020.0020.0000.0000.0000.000
145A151VAL00.017-0.00943.5830.0020.0020.0000.0000.0000.000
146A152ASP-1-0.809-0.90142.874-0.037-0.0370.0000.0000.0000.000
147A153GLU-1-0.846-0.93539.782-0.045-0.0450.0000.0000.0000.000
148A154ASN0-0.007-0.02438.395-0.006-0.0060.0000.0000.0000.000
149A155ILE0-0.0070.01238.5330.0000.0000.0000.0000.0000.000
150A156LEU0-0.009-0.00639.1690.0000.0000.0000.0000.0000.000
151A157ALA00.004-0.00334.794-0.002-0.0020.0000.0000.0000.000
152A158ALA00.0670.04034.830-0.003-0.0030.0000.0000.0000.000
153A159GLN0-0.060-0.02835.8260.0030.0030.0000.0000.0000.000
154A160LEU0-0.046-0.02534.467-0.001-0.0010.0000.0000.0000.000
155A161LEU00.0330.01528.432-0.005-0.0050.0000.0000.0000.000
156A162GLY00.0750.04531.7520.0010.0010.0000.0000.0000.000
157A163GLN0-0.028-0.01033.9860.0060.0060.0000.0000.0000.000
158A164VAL0-0.009-0.01528.1050.0000.0000.0000.0000.0000.000
159A165GLU-1-0.881-0.94828.707-0.035-0.0350.0000.0000.0000.000
160A166GLY0-0.0040.00330.3260.0050.0050.0000.0000.0000.000
161A167SER0-0.067-0.04131.0010.0040.0040.0000.0000.0000.000
162A168LEU00.0050.00824.9460.0000.0000.0000.0000.0000.000
163A169ASN00.0250.00128.0940.0040.0040.0000.0000.0000.000
164A170ARG10.8650.93630.0220.0350.0350.0000.0000.0000.000
165A171PHE00.0320.03924.1900.0060.0060.0000.0000.0000.000
166A172VAL00.0040.00525.0410.0030.0030.0000.0000.0000.000
167A173ARG10.9390.96627.6930.0170.0170.0000.0000.0000.000
168A174SER0-0.107-0.03730.9670.0020.0020.0000.0000.0000.000
169A175ASP-1-0.879-0.94028.4260.0070.0070.0000.0000.0000.000
170A176PHE0-0.040-0.03023.159-0.004-0.0040.0000.0000.0000.000
171A177LYS10.9650.99228.2450.0280.0280.0000.0000.0000.000
172A178TYR0-0.141-0.09731.759-0.002-0.0020.0000.0000.0000.000
173A179LEU00.0270.01828.5910.0010.0010.0000.0000.0000.000
174A180PRO0-0.003-0.00326.9370.0030.0030.0000.0000.0000.000
175A181THR0-0.044-0.05528.3950.0010.0010.0000.0000.0000.000
176A182ALA0-0.039-0.00231.1900.0010.0010.0000.0000.0000.000
177A183ASN00.0310.02134.2960.0010.0010.0000.0000.0000.000
178A184PHE0-0.012-0.00933.3050.0010.0010.0000.0000.0000.000
179A185ASP-1-0.893-0.94735.380-0.068-0.0680.0000.0000.0000.000
180A186GLU-1-0.819-0.91837.533-0.056-0.0560.0000.0000.0000.000
181A187TYR0-0.044-0.02336.7490.0020.0020.0000.0000.0000.000
182A188TRP00.020-0.00836.8830.0010.0010.0000.0000.0000.000
183A189ALA00.0030.02039.0060.0010.0010.0000.0000.0000.000
184A190LEU0-0.031-0.01642.2040.0020.0020.0000.0000.0000.000
185A191LEU0-0.0030.00739.0450.0020.0020.0000.0000.0000.000
186A192SER0-0.052-0.04640.7280.0020.0020.0000.0000.0000.000
187A193ALA00.0020.00742.6510.0010.0010.0000.0000.0000.000
188A194GLN0-0.024-0.01745.5650.0030.0030.0000.0000.0000.000
189A195ILE0-0.069-0.02440.3620.0020.0020.0000.0000.0000.000
190A196LYS10.9530.98144.2850.0380.0380.0000.0000.0000.000