FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2024-05-02

All entries: 37386

Number of unique PDB entries: 7781

tag_button

FMODB ID: YVZZ2

Calculation Name: 2OL5-A-Xray372

Preferred Name:
Warning: Undefined array key "pref_name" in /home/FMODBwui_src/fmodbwui/detail.php on line 446

Target Type:
Warning: Undefined array key "target_type" in /home/FMODBwui_src/fmodbwui/detail.php on line 447

Ligand Name:
Warning: Undefined variable $Ligand in /home/FMODBwui_src/fmodbwui/detail.php on line 448

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 448

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 448

ligand 3-letter code:
Warning: Undefined variable $Ligand in /home/FMODBwui_src/fmodbwui/detail.php on line 449

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 449

Warning: Trying to access array offset on value of type null in /home/FMODBwui_src/fmodbwui/detail.php on line 449

PDB ID: 2OL5

Chain ID: A

ChEMBL ID:
Warning: Undefined array key "chembl_id" in /home/FMODBwui_src/fmodbwui/detail.php on line 452

Warning: Undefined array key "chembl_id" in /home/FMODBwui_src/fmodbwui/detail.php on line 452

UniProt ID: Q5L206

Base Structure: X-ray

Registration Date: 2023-09-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 189
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 22 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1973092.611123
FMO2-HF: Nuclear repulsion 1895810.870693
FMO2-HF: Total energy -77281.74043
FMO2-MP2: Total energy -77504.844727


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
"
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:11:ASP)


Summations of interaction energy for fragment #1(A:11:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-8.955-6.008-0.028-1.477-1.4410.002
Interaction energy analysis for fragmet #1(A:11:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : -1 / q_Mulliken : -0.945 / q_NPA : -0.982
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A13ASP-1-0.902-0.9683.80420.88123.534-0.026-1.437-1.1900.002
4A14VAL00.0120.0045.013-4.553-4.5530.0000.0000.0000.000
5A15ALA0-0.029-0.0154.312-3.932-3.870-0.001-0.009-0.0520.000
6A16TYR00.0510.0106.025-2.439-2.4390.0000.0000.0000.000
7A17GLN00.0430.0379.340-1.065-1.0650.0000.0000.0000.000
8A18VAL0-0.018-0.0117.897-1.885-1.8850.0000.0000.0000.000
9A19ILE0-0.009-0.0109.688-1.542-1.5420.0000.0000.0000.000
10A20GLU-1-0.934-0.96512.13416.81216.8120.0000.0000.0000.000
11A21GLU-1-0.953-0.98013.89317.64917.6490.0000.0000.0000.000
12A22ASN0-0.059-0.01713.062-1.696-1.6960.0000.0000.0000.000
13A23SER00.0400.04315.596-0.078-0.0780.0000.0000.0000.000
14A24PHE00.0100.00717.473-0.370-0.3700.0000.0000.0000.000
15A25ALA00.0180.02716.5440.1920.1920.0000.0000.0000.000
16A26THR0-0.027-0.02017.248-0.615-0.6150.0000.0000.0000.000
17A27LEU00.0050.00217.7600.7380.7380.0000.0000.0000.000
18A28VAL00.003-0.00219.138-0.652-0.6520.0000.0000.0000.000
19A29SER0-0.024-0.00520.4440.4340.4340.0000.0000.0000.000
20A30MET0-0.026-0.01123.077-0.033-0.0330.0000.0000.0000.000
21A31HIS0-0.028-0.02826.080-0.238-0.2380.0000.0000.0000.000
22A32GLN0-0.003-0.01029.237-0.297-0.2970.0000.0000.0000.000
23A33ARG10.8630.92429.862-9.300-9.3000.0000.0000.0000.000
24A34GLU-1-0.902-0.94529.0979.1409.1400.0000.0000.0000.000
25A35LEU0-0.036-0.01422.6920.1560.1560.0000.0000.0000.000
26A36PHE00.0550.03725.116-0.282-0.2820.0000.0000.0000.000
27A37ALA0-0.023-0.02722.3100.4850.4850.0000.0000.0000.000
28A38THR00.0070.00423.130-0.569-0.5690.0000.0000.0000.000
29A39HIS0-0.020-0.00421.8320.7210.7210.0000.0000.0000.000
30A40LEU0-0.034-0.02421.412-0.540-0.5400.0000.0000.0000.000
31A41PRO00.0190.01920.7760.5470.5470.0000.0000.0000.000
32A42LEU0-0.037-0.01217.422-0.194-0.1940.0000.0000.0000.000
33A43LEU0-0.0010.00517.8530.7110.7110.0000.0000.0000.000
34A44LEU0-0.0100.00112.5080.0400.0400.0000.0000.0000.000
35A45ASP-1-0.770-0.87917.06414.55614.5560.0000.0000.0000.000
36A46ARG10.9550.95318.034-11.419-11.4190.0000.0000.0000.000
37A47GLU-1-0.948-0.98118.43415.60615.6060.0000.0000.0000.000
38A48LYS10.8590.95113.306-18.182-18.1820.0000.0000.0000.000
39A49THR00.0020.01214.1350.8500.8500.0000.0000.0000.000
40A50CYS0-0.084-0.05016.545-0.466-0.4660.0000.0000.0000.000
41A51LEU0-0.0250.00514.1790.1790.1790.0000.0000.0000.000
42A52TYR00.0420.02118.258-0.661-0.6610.0000.0000.0000.000
43A53GLY00.0540.01821.4540.3480.3480.0000.0000.0000.000
44A54HIS0-0.025-0.02523.580-0.437-0.4370.0000.0000.0000.000
45A55PHE00.0130.03124.5070.0610.0610.0000.0000.0000.000
46A56ALA00.0760.02928.623-0.195-0.1950.0000.0000.0000.000
47A57ARG10.9100.93732.051-8.099-8.0990.0000.0000.0000.000
48A58SER0-0.059-0.02534.3850.0450.0450.0000.0000.0000.000
49A59ASN0-0.0010.00627.937-0.157-0.1570.0000.0000.0000.000
50A60PRO00.0340.00731.7940.1030.1030.0000.0000.0000.000
51A61GLN00.0200.01723.598-0.154-0.1540.0000.0000.0000.000
52A62TRP00.004-0.01728.3700.1860.1860.0000.0000.0000.000
53A63ASN0-0.025-0.01429.3650.0380.0380.0000.0000.0000.000
54A64ASP-1-0.843-0.91129.9879.2999.2990.0000.0000.0000.000
55A65ILE00.0150.02123.3940.2750.2750.0000.0000.0000.000
56A66GLN0-0.030-0.01625.2980.5560.5560.0000.0000.0000.000
57A67HIS0-0.022-0.02426.3640.0780.0780.0000.0000.0000.000
58A68GLN00.0240.02523.6840.3510.3510.0000.0000.0000.000
59A69THR0-0.099-0.04917.3540.3320.3320.0000.0000.0000.000
60A70VAL00.0050.02018.615-0.033-0.0330.0000.0000.0000.000
61A71LEU00.003-0.00913.5500.8490.8490.0000.0000.0000.000
62A72ALA0-0.0070.00114.822-0.691-0.6910.0000.0000.0000.000
63A73ILE0-0.013-0.00613.0371.4161.4160.0000.0000.0000.000
64A74PHE00.0300.01911.463-0.810-0.8100.0000.0000.0000.000
65A75HIS0-0.029-0.03812.0861.6431.6430.0000.0000.0000.000
66A76GLY00.0290.02612.246-0.210-0.2100.0000.0000.0000.000
67A77PRO0-0.039-0.00612.694-0.960-0.9600.0000.0000.0000.000
68A78HIS00.031-0.02614.1010.9590.9590.0000.0000.0000.000
69A79CYS00.012-0.00316.425-0.424-0.4240.0000.0000.0000.000
70A80TYR00.0230.02418.5930.4000.4000.0000.0000.0000.000
71A81ILE00.0040.00217.7450.0400.0400.0000.0000.0000.000
72A82SER00.0600.03321.034-0.280-0.2800.0000.0000.0000.000
73A83PRO00.0210.00624.2020.1520.1520.0000.0000.0000.000
74A84SER0-0.067-0.03725.517-0.278-0.2780.0000.0000.0000.000
75A85TRP00.0490.01821.527-0.006-0.0060.0000.0000.0000.000
76A86TYR0-0.010-0.00120.4200.2360.2360.0000.0000.0000.000
77A87GLU-1-0.844-0.93126.28811.22111.2210.0000.0000.0000.000
78A88THR0-0.077-0.04027.781-0.232-0.2320.0000.0000.0000.000
79A89ASN00.0610.03228.9800.2260.2260.0000.0000.0000.000
80A90GLN0-0.042-0.01728.6150.1130.1130.0000.0000.0000.000
81A91ALA0-0.008-0.00224.3550.5020.5020.0000.0000.0000.000
82A92VAL00.0110.01221.986-0.428-0.4280.0000.0000.0000.000
83A93PRO0-0.017-0.00322.0860.4560.4560.0000.0000.0000.000
84A94THR0-0.021-0.01416.6880.3280.3280.0000.0000.0000.000
85A95TRP00.0510.03017.217-0.349-0.3490.0000.0000.0000.000
86A96ASN0-0.017-0.00913.9751.1291.1290.0000.0000.0000.000
87A97TYR0-0.015-0.00610.883-1.009-1.0090.0000.0000.0000.000
88A98VAL00.0230.0138.1151.6861.6860.0000.0000.0000.000
89A99ALA0-0.036-0.0148.449-1.866-1.8660.0000.0000.0000.000
90A100VAL00.0140.0226.1932.8162.8160.0000.0000.0000.000
91A101HIS0-0.0010.0048.380-1.450-1.4500.0000.0000.0000.000
92A102VAL00.0390.0059.4991.5441.5440.0000.0000.0000.000
93A103TYR0-0.0070.00811.467-1.922-1.9220.0000.0000.0000.000
94A104GLY00.0760.02814.3890.6740.6740.0000.0000.0000.000
95A105ASN0-0.033-0.00217.2630.0890.0890.0000.0000.0000.000
96A106VAL00.0340.01321.0440.1970.1970.0000.0000.0000.000
97A107GLU-1-0.940-0.95323.30810.95810.9580.0000.0000.0000.000
98A108LEU0-0.042-0.03326.1560.1240.1240.0000.0000.0000.000
99A109ILE00.0060.00825.894-0.100-0.1000.0000.0000.0000.000
100A110ASN00.029-0.00129.918-0.001-0.0010.0000.0000.0000.000
101A111ASP-1-0.847-0.92132.8358.3838.3830.0000.0000.0000.000
102A112GLN0-0.005-0.02933.4790.1350.1350.0000.0000.0000.000
103A113GLY00.0100.02634.630-0.014-0.0140.0000.0000.0000.000
104A114GLU-1-0.942-0.97828.64310.27110.2710.0000.0000.0000.000
105A115VAL0-0.031-0.01229.6440.2890.2890.0000.0000.0000.000
106A116MET00.0110.01030.3610.1520.1520.0000.0000.0000.000
107A117GLN0-0.0110.00727.911-0.265-0.2650.0000.0000.0000.000
108A118SER0-0.053-0.03325.4410.2810.2810.0000.0000.0000.000
109A119LEU0-0.008-0.01526.5920.2110.2110.0000.0000.0000.000
110A120HIS00.0020.00528.934-0.179-0.1790.0000.0000.0000.000
111A121ASP-1-0.887-0.95324.12611.47611.4760.0000.0000.0000.000
112A122MET0-0.068-0.04024.5860.3580.3580.0000.0000.0000.000
113A123VAL0-0.0060.00125.5830.0560.0560.0000.0000.0000.000
114A124GLU-1-0.921-0.96026.6769.8449.8440.0000.0000.0000.000
115A125LYS10.7750.90517.967-14.219-14.2190.0000.0000.0000.000
116A126TYR0-0.062-0.07720.8770.3080.3080.0000.0000.0000.000
117A127GLU-1-0.824-0.88126.2008.9598.9590.0000.0000.0000.000
118A128ALA0-0.013-0.00928.7710.2370.2370.0000.0000.0000.000
119A129PRO00.029-0.00428.748-0.300-0.3000.0000.0000.0000.000
120A130GLY0-0.032-0.00531.376-0.169-0.1690.0000.0000.0000.000
121A131SER0-0.082-0.03133.351-0.418-0.4180.0000.0000.0000.000
122A132ARG10.9100.93335.160-7.377-7.3770.0000.0000.0000.000
123A133TYR0-0.078-0.04433.373-0.139-0.1390.0000.0000.0000.000
124A134GLN00.021-0.00634.5590.1210.1210.0000.0000.0000.000
125A135LEU00.0140.03235.1990.1130.1130.0000.0000.0000.000
126A136SER0-0.025-0.02437.921-0.180-0.1800.0000.0000.0000.000
127A137GLU-1-0.804-0.89937.8447.6857.6850.0000.0000.0000.000
128A138VAL0-0.062-0.03642.018-0.164-0.1640.0000.0000.0000.000
129A139ASP-1-0.853-0.92244.5806.3336.3330.0000.0000.0000.000
130A140ALA0-0.008-0.01145.7370.0760.0760.0000.0000.0000.000
131A141GLY0-0.0120.00145.804-0.027-0.0270.0000.0000.0000.000
132A142MET0-0.035-0.00740.0830.1750.1750.0000.0000.0000.000
133A143LEU00.1110.05138.2960.1130.1130.0000.0000.0000.000
134A144SER0-0.039-0.02239.0880.1390.1390.0000.0000.0000.000
135A145GLY0-0.021-0.01940.4760.0240.0240.0000.0000.0000.000
136A146MET00.0290.01935.4850.1480.1480.0000.0000.0000.000
137A147ASN0-0.033-0.01835.9470.2540.2540.0000.0000.0000.000
138A148LYS10.8390.91436.872-6.792-6.7920.0000.0000.0000.000
139A149GLY00.0090.01736.9770.0130.0130.0000.0000.0000.000
140A150ILE0-0.024-0.00531.2640.0910.0910.0000.0000.0000.000
141A151GLN0-0.036-0.01029.811-0.464-0.4640.0000.0000.0000.000
142A152ALA00.0560.02228.0010.2870.2870.0000.0000.0000.000
143A153PHE0-0.031-0.01521.559-0.173-0.1730.0000.0000.0000.000
144A154LYS11.0071.01121.924-11.492-11.4920.0000.0000.0000.000
145A155ILE0-0.025-0.01917.355-0.243-0.2430.0000.0000.0000.000
146A156ILE00.0340.01118.2890.6380.6380.0000.0000.0000.000
147A157ILE0-0.013-0.00212.3720.1280.1280.0000.0000.0000.000
148A158LYS10.8510.90414.832-14.237-14.2370.0000.0000.0000.000
149A159ARG10.9260.95310.516-18.373-18.3730.0000.0000.0000.000
150A160ILE00.0360.0316.167-1.281-1.2810.0000.0000.0000.000
151A161GLU-1-0.895-0.9415.74525.66425.6640.0000.0000.0000.000
152A162GLY00.0220.0163.803-2.578-2.4740.000-0.021-0.0830.000
153A163LYS10.8370.9154.469-22.966-22.838-0.001-0.010-0.1160.000
154A164ALA00.0670.0245.762-1.346-1.3460.0000.0000.0000.000
155A165LYS10.8920.9767.210-18.875-18.8750.0000.0000.0000.000
156A166LEU00.0610.0049.076-1.399-1.3990.0000.0000.0000.000
157A167SER0-0.018-0.01611.744-1.072-1.0720.0000.0000.0000.000
158A168GLN00.0830.0448.378-2.756-2.7560.0000.0000.0000.000
159A169ASN0-0.028-0.01612.2250.3750.3750.0000.0000.0000.000
160A170HIS0-0.0110.01013.852-1.255-1.2550.0000.0000.0000.000
161A171PRO00.0280.00516.3340.7020.7020.0000.0000.0000.000
162A172ALA00.0700.02317.703-0.111-0.1110.0000.0000.0000.000
163A173HIS00.0930.05018.6130.1100.1100.0000.0000.0000.000
164A174ARG10.9370.97020.435-13.912-13.9120.0000.0000.0000.000
165A175GLN0-0.014-0.01213.9970.0200.0200.0000.0000.0000.000
166A176GLU-1-0.924-0.95418.86013.72913.7290.0000.0000.0000.000
167A177ARG10.7890.88721.381-11.486-11.4860.0000.0000.0000.000
168A178ILE0-0.017-0.00818.884-0.354-0.3540.0000.0000.0000.000
169A179ILE00.0200.01517.207-0.226-0.2260.0000.0000.0000.000
170A180LYS10.9460.97321.075-12.275-12.2750.0000.0000.0000.000
171A181GLN0-0.032-0.01224.474-0.480-0.4800.0000.0000.0000.000
172A182LEU00.002-0.00718.949-0.228-0.2280.0000.0000.0000.000
173A183GLU-1-0.931-0.97022.66312.78012.7800.0000.0000.0000.000
174A184GLN0-0.032-0.01224.003-0.320-0.3200.0000.0000.0000.000
175A185MET0-0.0040.02325.190-0.320-0.3200.0000.0000.0000.000
176A186PRO0-0.071-0.03626.2610.3450.3450.0000.0000.0000.000
177A187PHE00.0360.00524.887-0.289-0.2890.0000.0000.0000.000
178A188GLU-1-0.893-0.95922.21112.25112.2510.0000.0000.0000.000
179A189ASN0-0.041-0.00319.2611.0461.0460.0000.0000.0000.000
180A190GLU-1-0.793-0.91818.77913.40213.4020.0000.0000.0000.000
181A191LYS10.9840.99519.796-10.653-10.6530.0000.0000.0000.000
182A192ARG10.8920.93915.728-15.163-15.1630.0000.0000.0000.000
183A193ILE0-0.014-0.01513.7211.2181.2180.0000.0000.0000.000
184A194ALA00.0310.00715.5660.8440.8440.0000.0000.0000.000
185A195SER0-0.108-0.05816.9230.0470.0470.0000.0000.0000.000
186A196LEU0-0.045-0.02311.1240.7860.7860.0000.0000.0000.000
187A197MET0-0.053-0.02612.4470.9410.9410.0000.0000.0000.000
188A198LYS10.8800.96713.970-14.726-14.7260.0000.0000.0000.000
189A199LYS10.9621.00910.348-19.245-19.2450.0000.0000.0000.000