FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: YZQ22

Calculation Name: 2EIA-B-Xray372

Preferred Name:

Target Type:

Ligand Name:

ligand 3-letter code:

PDB ID: 2EIA

Chain ID: B

ChEMBL ID:

UniProt ID: P69732

Base Structure: X-ray

Registration Date: 2023-06-21

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 203
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2119823.953533
FMO2-HF: Nuclear repulsion 2037398.596266
FMO2-HF: Total energy -82425.357267
FMO2-MP2: Total energy -82662.228718


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(B:17:PRO)


Summations of interaction energy for fragment #1(B:17:PRO)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-5.523-2.6372.919-1.997-3.8070.002
Interaction energy analysis for fragmet #1(B:17:PRO)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.050 / q_NPA : 0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3B19GLY00.1040.0463.725-1.4310.3050.004-0.799-0.9410.000
4B20TYR00.0180.0222.596-1.980-1.1322.914-1.142-2.6200.002
5B21THR00.0180.0064.149-1.258-0.9560.001-0.056-0.2460.000
6B22THR00.0340.0156.084-0.236-0.2360.0000.0000.0000.000
7B23TRP0-0.0110.0057.737-0.257-0.2570.0000.0000.0000.000
8B24VAL00.0090.0097.675-0.228-0.2280.0000.0000.0000.000
9B25ASN0-0.007-0.0039.944-0.216-0.2160.0000.0000.0000.000
10B26THR00.0320.00911.992-0.120-0.1200.0000.0000.0000.000
11B27ILE0-0.027-0.01112.550-0.081-0.0810.0000.0000.0000.000
12B28GLN0-0.034-0.03112.982-0.040-0.0400.0000.0000.0000.000
13B29THR0-0.036-0.01615.877-0.055-0.0550.0000.0000.0000.000
14B30ASN0-0.075-0.03717.628-0.029-0.0290.0000.0000.0000.000
15B31GLY00.0480.04418.056-0.030-0.0300.0000.0000.0000.000
16B32LEU00.001-0.00315.1770.0230.0230.0000.0000.0000.000
17B33LEU0-0.058-0.00517.833-0.031-0.0310.0000.0000.0000.000
18B34ASN00.0260.01519.670-0.024-0.0240.0000.0000.0000.000
19B35GLU-1-0.867-0.94619.8370.1560.1560.0000.0000.0000.000
20B36ALA0-0.0020.00918.2970.0060.0060.0000.0000.0000.000
21B37SER00.007-0.02915.5840.0270.0270.0000.0000.0000.000
22B38GLN00.000-0.00215.5440.0270.0270.0000.0000.0000.000
23B39ASN00.0140.00317.232-0.009-0.0090.0000.0000.0000.000
24B40LEU0-0.0250.00410.782-0.001-0.0010.0000.0000.0000.000
25B41PHE00.0320.00511.7270.0230.0230.0000.0000.0000.000
26B42GLY00.0100.01813.403-0.036-0.0360.0000.0000.0000.000
27B43ILE0-0.035-0.00712.838-0.041-0.0410.0000.0000.0000.000
28B44LEU0-0.047-0.0288.026-0.022-0.0220.0000.0000.0000.000
29B45SER0-0.022-0.0159.549-0.068-0.0680.0000.0000.0000.000
30B46VAL0-0.042-0.02411.665-0.046-0.0460.0000.0000.0000.000
31B47ASP-1-0.823-0.89612.440-0.077-0.0770.0000.0000.0000.000
32B48CYS0-0.044-0.0048.134-0.009-0.0090.0000.0000.0000.000
33B49THR0-0.026-0.04210.5300.0620.0620.0000.0000.0000.000
34B50SER00.024-0.02311.6560.0400.0400.0000.0000.0000.000
35B51GLU-1-0.821-0.86410.779-0.284-0.2840.0000.0000.0000.000
36B52GLU-1-0.802-0.8656.636-0.317-0.3170.0000.0000.0000.000
37B53MET0-0.038-0.0038.3780.2270.2270.0000.0000.0000.000
38B54ASN00.0280.02310.9340.1070.1070.0000.0000.0000.000
39B55ALA00.0100.0096.8190.0490.0490.0000.0000.0000.000
40B56PHE0-0.035-0.0246.1800.4110.4110.0000.0000.0000.000
41B57LEU00.0330.0118.9190.0540.0540.0000.0000.0000.000
42B58ASP-1-0.837-0.91111.2600.1570.1570.0000.0000.0000.000
43B59VAL0-0.066-0.0236.0740.0040.0040.0000.0000.0000.000
44B60VAL00.0050.0099.4000.0860.0860.0000.0000.0000.000
45B61PRO0-0.0040.00811.535-0.088-0.0880.0000.0000.0000.000
46B62GLY0-0.007-0.01413.388-0.050-0.0500.0000.0000.0000.000
47B63GLN00.0280.01616.606-0.026-0.0260.0000.0000.0000.000
48B64ALA0-0.015-0.03018.931-0.013-0.0130.0000.0000.0000.000
49B65GLY00.0460.03721.1440.0000.0000.0000.0000.0000.000
50B66GLN00.012-0.02619.803-0.021-0.0210.0000.0000.0000.000
51B67LYS10.7930.88013.788-0.264-0.2640.0000.0000.0000.000
52B68GLN0-0.047-0.02219.261-0.010-0.0100.0000.0000.0000.000
53B69ILE00.0190.02322.563-0.005-0.0050.0000.0000.0000.000
54B70LEU0-0.011-0.00617.177-0.002-0.0020.0000.0000.0000.000
55B71LEU00.0110.00217.890-0.009-0.0090.0000.0000.0000.000
56B72ASP-1-0.811-0.91021.3340.0720.0720.0000.0000.0000.000
57B73ALA0-0.049-0.01823.574-0.011-0.0110.0000.0000.0000.000
58B74ILE00.012-0.01318.247-0.007-0.0070.0000.0000.0000.000
59B75ASP-1-0.825-0.89322.6120.0470.0470.0000.0000.0000.000
60B76LYS10.8800.93725.202-0.071-0.0710.0000.0000.0000.000
61B77ILE0-0.024-0.01024.493-0.006-0.0060.0000.0000.0000.000
62B78ALA0-0.027-0.01223.934-0.007-0.0070.0000.0000.0000.000
63B79ASP-1-0.870-0.93725.9020.0220.0220.0000.0000.0000.000
64B80ASP-1-0.851-0.87929.4640.0270.0270.0000.0000.0000.000
65B81TRP00.004-0.01627.250-0.002-0.0020.0000.0000.0000.000
66B82ASP-1-0.736-0.88528.219-0.001-0.0010.0000.0000.0000.000
67B83ASN0-0.097-0.03730.569-0.003-0.0030.0000.0000.0000.000
68B84ARG10.7780.84832.329-0.029-0.0290.0000.0000.0000.000
69B85HIS10.7690.88630.550-0.010-0.0100.0000.0000.0000.000
70B86PRO00.0440.04432.363-0.002-0.0020.0000.0000.0000.000
71B87LEU00.006-0.01030.298-0.002-0.0020.0000.0000.0000.000
72B88PRO0-0.024-0.02533.915-0.001-0.0010.0000.0000.0000.000
73B89ASN0-0.037-0.01934.732-0.001-0.0010.0000.0000.0000.000
74B90ALA00.0360.03630.183-0.003-0.0030.0000.0000.0000.000
75B91PRO0-0.0060.00628.6400.0010.0010.0000.0000.0000.000
76B92LEU00.0300.00526.4460.0000.0000.0000.0000.0000.000
77B93VAL0-0.021-0.01323.075-0.002-0.0020.0000.0000.0000.000
78B94ALA00.0120.01222.9960.0050.0050.0000.0000.0000.000
79B95PRO00.006-0.00224.998-0.006-0.0060.0000.0000.0000.000
80B96PRO00.0340.02324.475-0.004-0.0040.0000.0000.0000.000
81B97GLN00.0140.00624.998-0.004-0.0040.0000.0000.0000.000
82B98GLY00.0270.01826.9910.0060.0060.0000.0000.0000.000
83B99PRO0-0.003-0.00527.167-0.004-0.0040.0000.0000.0000.000
84B100ILE00.0350.02822.2100.0020.0020.0000.0000.0000.000
85B101PRO00.008-0.00526.5030.0050.0050.0000.0000.0000.000
86B102MET00.0130.01224.288-0.002-0.0020.0000.0000.0000.000
87B103THR00.0260.01826.4290.0040.0040.0000.0000.0000.000
88B104ALA00.0400.00824.407-0.002-0.0020.0000.0000.0000.000
89B105ARG10.8420.92522.2060.0340.0340.0000.0000.0000.000
90B106PHE0-0.032-0.02121.508-0.005-0.0050.0000.0000.0000.000
91B107ILE00.0060.02020.409-0.009-0.0090.0000.0000.0000.000
92B108ARG10.8160.89918.190-0.051-0.0510.0000.0000.0000.000
93B109GLY00.0250.00716.6910.0000.0000.0000.0000.0000.000
94B110LEU0-0.037-0.01517.303-0.018-0.0180.0000.0000.0000.000
95B111GLY0-0.005-0.00419.023-0.003-0.0030.0000.0000.0000.000
96B112VAL0-0.040-0.00418.5190.0020.0020.0000.0000.0000.000
97B113PRO00.0130.03117.415-0.010-0.0100.0000.0000.0000.000
98B114ARG10.8940.8869.6810.4900.4900.0000.0000.0000.000
99B115GLU-1-0.841-0.92814.939-0.180-0.1800.0000.0000.0000.000
100B116ARG10.6800.79016.9500.1000.1000.0000.0000.0000.000
101B117GLN0-0.012-0.02514.7820.0280.0280.0000.0000.0000.000
102B118MET0-0.041-0.02711.721-0.011-0.0110.0000.0000.0000.000
103B119GLU-1-0.800-0.84215.962-0.096-0.0960.0000.0000.0000.000
104B120PRO00.0110.00419.6890.0070.0070.0000.0000.0000.000
105B121ALA0-0.053-0.03021.4690.0110.0110.0000.0000.0000.000
106B122PHE00.000-0.00116.3730.0100.0100.0000.0000.0000.000
107B123ASP-1-0.796-0.89218.982-0.070-0.0700.0000.0000.0000.000
108B124GLN00.0210.00019.9420.0140.0140.0000.0000.0000.000
109B125PHE0-0.0290.01120.0710.0120.0120.0000.0000.0000.000
110B126ARG10.8290.90414.5380.1000.1000.0000.0000.0000.000
111B127GLN0-0.053-0.04617.1510.0280.0280.0000.0000.0000.000
112B128THR0-0.030-0.02418.8970.0160.0160.0000.0000.0000.000
113B129TYR0-0.033-0.03015.2000.0150.0150.0000.0000.0000.000
114B130ARG10.8530.90714.724-0.084-0.0840.0000.0000.0000.000
115B131GLN0-0.026-0.00216.9490.0280.0280.0000.0000.0000.000
116B132TRP00.0870.03320.4270.0070.0070.0000.0000.0000.000
117B133ILE00.0270.02314.5830.0110.0110.0000.0000.0000.000
118B134ILE0-0.051-0.01717.3170.0170.0170.0000.0000.0000.000
119B135GLU-1-0.892-0.96319.7900.0680.0680.0000.0000.0000.000
120B136ALA00.0100.00820.946-0.001-0.0010.0000.0000.0000.000
121B137MET0-0.017-0.01616.7690.0170.0170.0000.0000.0000.000
122B138SER00.0040.02021.180-0.005-0.0050.0000.0000.0000.000
123B139GLU-1-0.855-0.91424.3460.0690.0690.0000.0000.0000.000
124B140GLY00.0500.01323.965-0.005-0.0050.0000.0000.0000.000
125B141ILE0-0.024-0.01321.490-0.003-0.0030.0000.0000.0000.000
126B142LYS10.8460.90225.359-0.086-0.0860.0000.0000.0000.000
127B143VAL0-0.0390.00027.844-0.008-0.0080.0000.0000.0000.000
128B144MET0-0.0110.00724.434-0.007-0.0070.0000.0000.0000.000
129B145ILE00.0120.00727.886-0.003-0.0030.0000.0000.0000.000
130B146GLY0-0.045-0.02230.250-0.005-0.0050.0000.0000.0000.000
131B147LYS10.9150.98130.370-0.088-0.0880.0000.0000.0000.000
132B148PRO0-0.039-0.01232.5670.0020.0020.0000.0000.0000.000
133B149LYS10.9040.94529.561-0.088-0.0880.0000.0000.0000.000
134B150ALA00.1090.07431.781-0.001-0.0010.0000.0000.0000.000
135B151GLN00.021-0.01133.468-0.007-0.0070.0000.0000.0000.000
136B152ASN0-0.045-0.01935.0400.0000.0000.0000.0000.0000.000
137B153ILE0-0.0180.01435.324-0.004-0.0040.0000.0000.0000.000
138B154ARG10.8550.91438.195-0.050-0.0500.0000.0000.0000.000
139B155GLN00.0630.04141.9570.0010.0010.0000.0000.0000.000
140B156GLY00.0240.00744.457-0.001-0.0010.0000.0000.0000.000
141B157ALA00.006-0.02347.077-0.001-0.0010.0000.0000.0000.000
142B158LYS10.9280.96349.830-0.032-0.0320.0000.0000.0000.000
143B159GLU-1-0.815-0.86242.9720.0460.0460.0000.0000.0000.000
144B160PRO00.0560.03446.1210.0000.0000.0000.0000.0000.000
145B161TYR00.015-0.01543.4700.0020.0020.0000.0000.0000.000
146B162PRO00.0340.00143.0390.0030.0030.0000.0000.0000.000
147B163GLU-1-0.869-0.92841.2200.0410.0410.0000.0000.0000.000
148B164PHE0-0.052-0.02740.2520.0030.0030.0000.0000.0000.000
149B165VAL0-0.011-0.00538.9390.0040.0040.0000.0000.0000.000
150B166ASP-1-0.928-0.94736.6380.0630.0630.0000.0000.0000.000
151B167ARG10.8320.87935.430-0.049-0.0490.0000.0000.0000.000
152B168LEU0-0.044-0.01634.7810.0060.0060.0000.0000.0000.000
153B169LEU00.006-0.00333.5130.0060.0060.0000.0000.0000.000
154B170SER0-0.0020.00031.2340.0100.0100.0000.0000.0000.000
155B171GLN00.000-0.00729.8120.0030.0030.0000.0000.0000.000
156B172ILE00.0320.03328.9670.0100.0100.0000.0000.0000.000
157B173LYS10.9160.96424.235-0.114-0.1140.0000.0000.0000.000
158B174SER0-0.130-0.08125.4500.0100.0100.0000.0000.0000.000
159B175GLU-1-0.834-0.93524.2490.1240.1240.0000.0000.0000.000
160B176GLY0-0.0210.00522.2420.0130.0130.0000.0000.0000.000
161B177HIS0-0.052-0.03022.6270.0140.0140.0000.0000.0000.000
162B178PRO00.0200.00722.623-0.005-0.0050.0000.0000.0000.000
163B179GLN0-0.037-0.03424.375-0.008-0.0080.0000.0000.0000.000
164B180GLU-1-0.854-0.91827.2560.0800.0800.0000.0000.0000.000
165B181ILE00.0220.00926.864-0.007-0.0070.0000.0000.0000.000
166B182SER00.0290.01327.842-0.003-0.0030.0000.0000.0000.000
167B183LYS10.8560.91329.841-0.066-0.0660.0000.0000.0000.000
168B184PHE00.0230.01232.754-0.004-0.0040.0000.0000.0000.000
169B185LEU00.0150.00730.232-0.005-0.0050.0000.0000.0000.000
170B186THR0-0.002-0.00533.262-0.004-0.0040.0000.0000.0000.000
171B187ASP-1-0.839-0.88335.6520.0570.0570.0000.0000.0000.000
172B188THR0-0.021-0.01637.368-0.005-0.0050.0000.0000.0000.000
173B189LEU0-0.020-0.00835.073-0.004-0.0040.0000.0000.0000.000
174B190THR0-0.008-0.02738.452-0.004-0.0040.0000.0000.0000.000
175B191ILE00.0550.02740.800-0.003-0.0030.0000.0000.0000.000
176B192GLN0-0.039-0.01241.4500.0000.0000.0000.0000.0000.000
177B193ASN0-0.022-0.02639.275-0.003-0.0030.0000.0000.0000.000
178B194ALA00.0770.05942.5740.0000.0000.0000.0000.0000.000
179B195ASN0-0.022-0.00445.1180.0000.0000.0000.0000.0000.000
180B196GLU-1-0.841-0.93048.2950.0380.0380.0000.0000.0000.000
181B197GLU-1-0.934-0.95251.3740.0290.0290.0000.0000.0000.000
182B198CYS0-0.079-0.01347.930-0.001-0.0010.0000.0000.0000.000
183B199ARG10.8140.88045.734-0.043-0.0430.0000.0000.0000.000
184B200ASN0-0.041-0.01649.4620.0000.0000.0000.0000.0000.000
185B201ALA00.0370.02051.885-0.001-0.0010.0000.0000.0000.000
186B202MET0-0.031-0.01445.8250.0000.0000.0000.0000.0000.000
187B203ARG10.8100.90849.438-0.035-0.0350.0000.0000.0000.000
188B204HIS0-0.034-0.02152.4930.0000.0000.0000.0000.0000.000
189B205LEU0-0.0210.01147.5830.0000.0000.0000.0000.0000.000
190B206ARG10.8570.92145.461-0.038-0.0380.0000.0000.0000.000
191B207PRO0-0.019-0.01840.6430.0000.0000.0000.0000.0000.000
192B208GLU-1-0.829-0.92040.7840.0470.0470.0000.0000.0000.000
193B209ASP-1-0.833-0.89741.5200.0400.0400.0000.0000.0000.000
194B210THR0-0.041-0.04441.6010.0020.0020.0000.0000.0000.000
195B211LEU00.0230.01338.2960.0000.0000.0000.0000.0000.000
196B212GLU-1-0.818-0.91841.7070.0410.0410.0000.0000.0000.000
197B213GLU-1-0.892-0.94444.5940.0310.0310.0000.0000.0000.000
198B214LYS10.8020.91041.133-0.051-0.0510.0000.0000.0000.000
199B215MET0-0.036-0.04042.9540.0000.0000.0000.0000.0000.000
200B216TYR0-0.0330.00346.447-0.002-0.0020.0000.0000.0000.000
201B217ALA00.0330.02649.393-0.002-0.0020.0000.0000.0000.000
202B219ARG10.8480.91649.777-0.027-0.0270.0000.0000.0000.000
203B220ASP-1-0.964-0.96551.5530.0270.0270.0000.0000.0000.000