FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: Z99VN

Calculation Name: 6NU2-K-Other547

Preferred Name: Aurora kinase A-interacting protein

Target Type: SINGLE PROTEIN

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 6NU2

Chain ID: K

ChEMBL ID: CHEMBL5910

UniProt ID: Q9NWT8

Base Structure: ElectronMicroscopy

Registration Date: 2025-10-06

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 177
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -1686460.498853
FMO2-HF: Nuclear repulsion 1614495.46792
FMO2-HF: Total energy -71965.030933
FMO2-MP2: Total energy -72174.613868


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:2:SER)


Summations of interaction energy for fragment #1(A:2:SER)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
33.88138.1335.389-4.473-5.168-0.043
Interaction energy analysis for fragmet #1(A:2:SER)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.869 / q_NPA : 0.924
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A4PHE00.0480.0242.462-6.663-2.6685.391-4.461-4.925-0.043
4A5SER00.0600.0375.0992.6662.738-0.001-0.003-0.0680.000
8A9GLN00.0180.0104.695-5.966-5.781-0.001-0.009-0.1750.000
5A6ARG10.9910.9868.61223.73623.7360.0000.0000.0000.000
6A7ALA00.0590.03910.229-0.135-0.1350.0000.0000.0000.000
7A8PRO00.0280.0069.1890.3100.3100.0000.0000.0000.000
9A10GLN0-0.016-0.0078.0450.4610.4610.0000.0000.0000.000
10A11TRP00.0290.00511.3890.9020.9020.0000.0000.0000.000
11A12ALA00.0040.0008.6900.6950.6950.0000.0000.0000.000
12A13THR0-0.062-0.0309.2110.5350.5350.0000.0000.0000.000
13A14PHE0-0.055-0.03011.0061.1151.1150.0000.0000.0000.000
14A15ALA00.0250.03913.7401.2741.2740.0000.0000.0000.000
15A16ARG10.8490.92715.42314.19814.1980.0000.0000.0000.000
16A17ILE00.0080.00915.4640.0320.0320.0000.0000.0000.000
17A18TRP00.025-0.00619.5620.9430.9430.0000.0000.0000.000
18A19TYR0-0.023-0.02518.927-0.340-0.3400.0000.0000.0000.000
19A20LEU00.0350.02324.3950.4450.4450.0000.0000.0000.000
20A21LEU0-0.045-0.03627.623-0.073-0.0730.0000.0000.0000.000
21A22ASP-1-0.744-0.87630.353-8.687-8.6870.0000.0000.0000.000
22A23GLY0-0.030-0.00533.758-0.010-0.0100.0000.0000.0000.000
23A24LYS10.9680.98537.0857.5727.5720.0000.0000.0000.000
24A25MET00.0310.02339.451-0.002-0.0020.0000.0000.0000.000
25A26GLN00.0130.00234.254-0.100-0.1000.0000.0000.0000.000
26A27PRO00.0170.01237.9370.1140.1140.0000.0000.0000.000
27A28PRO00.0470.02037.544-0.236-0.2360.0000.0000.0000.000
28A29GLY0-0.007-0.00336.702-0.190-0.1900.0000.0000.0000.000
29A30LYS10.9560.97432.6378.8668.8660.0000.0000.0000.000
30A31LEU00.0750.04732.394-0.286-0.2860.0000.0000.0000.000
31A32ALA00.0290.00531.896-0.284-0.2840.0000.0000.0000.000
32A33ALA0-0.0030.01232.022-0.195-0.1950.0000.0000.0000.000
33A34MET0-0.012-0.00627.956-0.361-0.3610.0000.0000.0000.000
34A35ALA00.0590.03327.299-0.437-0.4370.0000.0000.0000.000
35A36SER0-0.035-0.03627.979-0.299-0.2990.0000.0000.0000.000
36A37ILE0-0.005-0.00724.523-0.265-0.2650.0000.0000.0000.000
37A38ARG10.9460.98322.25512.51112.5110.0000.0000.0000.000
38A39LEU0-0.010-0.00423.550-0.428-0.4280.0000.0000.0000.000
39A40GLN0-0.020-0.03725.1700.1560.1560.0000.0000.0000.000
40A41GLY00.0450.03121.353-0.196-0.1960.0000.0000.0000.000
41A42LEU0-0.062-0.02520.619-0.505-0.5050.0000.0000.0000.000
42A43HIS0-0.062-0.02418.8210.4980.4980.0000.0000.0000.000
43A44LYS10.8490.93016.10116.17816.1780.0000.0000.0000.000
44A45PRO00.0090.00013.3050.6170.6170.0000.0000.0000.000
45A46VAL0-0.022-0.00713.2180.1930.1930.0000.0000.0000.000
46A47TYR00.0430.03216.4700.5450.5450.0000.0000.0000.000
47A48HIS00.0610.00220.1790.2790.2790.0000.0000.0000.000
48A49ALA00.0170.01922.347-0.090-0.0900.0000.0000.0000.000
49A50LEU0-0.025-0.02324.0330.2600.2600.0000.0000.0000.000
50A51SER0-0.063-0.04019.179-0.294-0.2940.0000.0000.0000.000
51A52ASP-1-0.880-0.93120.573-12.590-12.5900.0000.0000.0000.000
52A53CYS0-0.072-0.01118.546-0.084-0.0840.0000.0000.0000.000
53A54GLY00.0490.00720.3540.5000.5000.0000.0000.0000.000
54A55ASP-1-0.775-0.85619.318-16.512-16.5120.0000.0000.0000.000
55A56HIS0-0.029-0.02522.2260.3410.3410.0000.0000.0000.000
56A57VAL0-0.032-0.01425.002-0.245-0.2450.0000.0000.0000.000
57A58VAL00.0460.02927.7030.3820.3820.0000.0000.0000.000
58A59ILE0-0.048-0.02430.244-0.065-0.0650.0000.0000.0000.000
59A60MET00.0340.03733.0830.1370.1370.0000.0000.0000.000
60A61ASN0-0.076-0.05635.4720.2560.2560.0000.0000.0000.000
61A62THR0-0.021-0.03837.5880.1220.1220.0000.0000.0000.000
62A63ARG10.8380.88239.8587.2337.2330.0000.0000.0000.000
63A64HIS00.0210.01741.3520.2240.2240.0000.0000.0000.000
64A65ILE0-0.0110.00539.289-0.108-0.1080.0000.0000.0000.000
65A66ALA00.0230.00841.9030.2130.2130.0000.0000.0000.000
66A67PHE0-0.036-0.02242.818-0.186-0.1860.0000.0000.0000.000
67A68SER00.0220.01943.9450.0730.0730.0000.0000.0000.000
68A69GLY00.0210.00046.0650.0110.0110.0000.0000.0000.000
69A70ASN00.0500.01749.707-0.003-0.0030.0000.0000.0000.000
70A71LYS10.9070.94644.3107.0367.0360.0000.0000.0000.000
71A72TRP00.0220.01445.884-0.014-0.0140.0000.0000.0000.000
72A73GLU-1-0.823-0.91850.806-5.855-5.8550.0000.0000.0000.000
73A74GLN0-0.023-0.01151.974-0.012-0.0120.0000.0000.0000.000
74A75LYS10.8740.94144.2526.9486.9480.0000.0000.0000.000
75A76VAL00.0310.01150.141-0.033-0.0330.0000.0000.0000.000
76A77TYR0-0.023-0.02043.172-0.137-0.1370.0000.0000.0000.000
77A78SER00.0040.00249.5200.0360.0360.0000.0000.0000.000
78A79SER0-0.042-0.03149.822-0.158-0.1580.0000.0000.0000.000
79A80HIS0-0.013-0.00651.5780.1650.1650.0000.0000.0000.000
80A81THR0-0.049-0.01152.844-0.090-0.0900.0000.0000.0000.000
81A82GLY00.0300.01454.4270.0350.0350.0000.0000.0000.000
82A83TYR00.0190.01655.6270.0730.0730.0000.0000.0000.000
83A84PRO00.0620.02259.006-0.061-0.0610.0000.0000.0000.000
84A85GLY00.0480.02161.3760.0420.0420.0000.0000.0000.000
85A86GLY0-0.0050.01558.4170.0030.0030.0000.0000.0000.000
86A87PHE0-0.027-0.02754.794-0.152-0.1520.0000.0000.0000.000
87A88ARG10.9450.97953.0695.9025.9020.0000.0000.0000.000
88A89GLN00.035-0.00554.401-0.169-0.1690.0000.0000.0000.000
89A90VAL00.0090.02552.1320.0970.0970.0000.0000.0000.000
90A91THR00.0470.02652.289-0.112-0.1120.0000.0000.0000.000
91A92ALA00.0280.00647.948-0.068-0.0680.0000.0000.0000.000
92A93ALA00.0440.03049.162-0.115-0.1150.0000.0000.0000.000
93A94GLN00.000-0.00651.420-0.029-0.0290.0000.0000.0000.000
94A95LEU0-0.050-0.01946.116-0.011-0.0110.0000.0000.0000.000
95A96HIS0-0.026-0.02343.936-0.063-0.0630.0000.0000.0000.000
96A97LEU0-0.021-0.01248.192-0.047-0.0470.0000.0000.0000.000
97A98ARG10.8940.95450.6685.8215.8210.0000.0000.0000.000
98A99ASP-1-0.840-0.92744.816-7.104-7.1040.0000.0000.0000.000
99A100PRO0-0.0030.01144.299-0.087-0.0870.0000.0000.0000.000
100A101VAL0-0.0190.00139.808-0.225-0.2250.0000.0000.0000.000
101A102ALA00.0180.02341.152-0.149-0.1490.0000.0000.0000.000
102A103ILE0-0.012-0.00941.625-0.131-0.1310.0000.0000.0000.000
103A104VAL00.0360.00435.907-0.038-0.0380.0000.0000.0000.000
104A105LYS11.0131.02337.4167.6607.6600.0000.0000.0000.000
105A106LEU00.003-0.01138.187-0.103-0.1030.0000.0000.0000.000
106A107ALA0-0.042-0.01238.183-0.016-0.0160.0000.0000.0000.000
107A108ILE00.0300.02132.636-0.077-0.0770.0000.0000.0000.000
108A109TYR00.0160.00235.037-0.145-0.1450.0000.0000.0000.000
109A110GLY0-0.012-0.00337.1020.0590.0590.0000.0000.0000.000
110A111MET0-0.057-0.01833.6290.0440.0440.0000.0000.0000.000
111A112LEU00.0280.02430.229-0.066-0.0660.0000.0000.0000.000
112A113PRO00.0140.01730.2540.3540.3540.0000.0000.0000.000
113A114LYS10.8260.89633.5538.4358.4350.0000.0000.0000.000
114A115ASN00.0230.00530.6800.2000.2000.0000.0000.0000.000
115A116LEU00.0490.01133.9120.0380.0380.0000.0000.0000.000
116A117HIS00.0560.03527.7300.2700.2700.0000.0000.0000.000
117A118ARG10.8960.98031.0108.1488.1480.0000.0000.0000.000
118A119ARG10.9480.97833.0778.0348.0340.0000.0000.0000.000
119A120THR00.0330.00429.541-0.125-0.1250.0000.0000.0000.000
120A121MET0-0.001-0.00927.661-0.240-0.2400.0000.0000.0000.000
121A122MET0-0.062-0.02629.924-0.055-0.0550.0000.0000.0000.000
122A123GLU-1-0.926-0.96132.030-9.044-9.0440.0000.0000.0000.000
123A124ARG10.8210.92424.88611.59111.5910.0000.0000.0000.000
124A125LEU0-0.018-0.00228.389-0.316-0.3160.0000.0000.0000.000
125A126HIS00.0240.02129.1110.5500.5500.0000.0000.0000.000
126A127LEU0-0.054-0.03332.927-0.056-0.0560.0000.0000.0000.000
127A128PHE00.0830.03233.1560.1360.1360.0000.0000.0000.000
128A129PRO0-0.038-0.01837.774-0.043-0.0430.0000.0000.0000.000
129A130ASP-1-0.849-0.91239.891-7.124-7.1240.0000.0000.0000.000
130A131GLU-1-0.791-0.90337.305-8.677-8.6770.0000.0000.0000.000
131A132TYR0-0.058-0.00437.019-0.163-0.1630.0000.0000.0000.000
132A133ILE00.010-0.00531.9210.0110.0110.0000.0000.0000.000
133A134PRO0-0.003-0.00333.3510.0220.0220.0000.0000.0000.000
134A135GLU-1-0.764-0.86531.475-10.195-10.1950.0000.0000.0000.000
135A136ASP-1-0.927-0.96129.373-10.309-10.3090.0000.0000.0000.000
136A137ILE0-0.016-0.01327.931-0.400-0.4000.0000.0000.0000.000
137A138LEU0-0.027-0.02327.738-0.401-0.4010.0000.0000.0000.000
138A139LYS10.8420.90425.91910.26310.2630.0000.0000.0000.000
139A140ASN0-0.072-0.03023.727-0.237-0.2370.0000.0000.0000.000
140A141LEU0-0.045-0.01222.915-0.535-0.5350.0000.0000.0000.000
141A142VAL0-0.015-0.00817.994-0.302-0.3020.0000.0000.0000.000
142A143GLU-1-0.963-0.98117.726-17.002-17.0020.0000.0000.0000.000
143A144GLU-1-0.904-0.95622.271-10.616-10.6160.0000.0000.0000.000
144A145LEU0-0.066-0.02524.028-0.250-0.2500.0000.0000.0000.000
145A146PRO00.009-0.00125.0140.4170.4170.0000.0000.0000.000
146A147GLN00.0240.00827.8800.2030.2030.0000.0000.0000.000
147A148PRO0-0.070-0.03331.3990.0520.0520.0000.0000.0000.000
148A149ARG10.8260.89932.8787.7847.7840.0000.0000.0000.000
149A150LYS11.0000.99435.7618.2778.2770.0000.0000.0000.000
150A151ILE00.0580.03336.9970.0910.0910.0000.0000.0000.000
151A152PRO0-0.084-0.05139.986-0.009-0.0090.0000.0000.0000.000
152A153LYS10.9140.99642.0517.4917.4910.0000.0000.0000.000
153A154ARG10.8620.92844.2956.9576.9570.0000.0000.0000.000
154A155LEU00.0690.00747.852-0.080-0.0800.0000.0000.0000.000
155A156ASP-1-0.901-0.95049.541-6.258-6.2580.0000.0000.0000.000
156A157GLU-1-0.869-0.92844.059-7.347-7.3470.0000.0000.0000.000
157A158TYR0-0.098-0.05044.976-0.199-0.1990.0000.0000.0000.000
158A159THR0-0.013-0.00145.761-0.031-0.0310.0000.0000.0000.000
159A160GLN0-0.007-0.03048.6550.0230.0230.0000.0000.0000.000
160A161GLU-1-0.915-0.94247.428-6.720-6.7200.0000.0000.0000.000
161A162GLU-1-0.892-0.96543.784-7.261-7.2610.0000.0000.0000.000
162A163ILE0-0.064-0.02648.5470.0590.0590.0000.0000.0000.000
163A164ASP-1-0.849-0.91752.016-5.765-5.7650.0000.0000.0000.000
164A165ALA0-0.055-0.01749.8750.0750.0750.0000.0000.0000.000
165A166PHE0-0.055-0.01650.653-0.028-0.0280.0000.0000.0000.000
166A167PRO0-0.0200.00052.9210.1280.1280.0000.0000.0000.000
167A168ARG10.9520.95956.2255.3385.3380.0000.0000.0000.000
168A169LEU00.012-0.00555.7510.0020.0020.0000.0000.0000.000
169A170TRP0-0.029-0.01159.8700.0750.0750.0000.0000.0000.000
170A171THR00.000-0.00263.646-0.047-0.0470.0000.0000.0000.000
171A172PRO00.0020.01065.8720.0480.0480.0000.0000.0000.000
172A173PRO0-0.018-0.02068.8380.0130.0130.0000.0000.0000.000
173A174GLU-1-0.936-0.96672.005-4.383-4.3830.0000.0000.0000.000
174A175ASP-1-0.936-0.96173.317-4.158-4.1580.0000.0000.0000.000
175A176TYR0-0.055-0.02869.6380.0400.0400.0000.0000.0000.000
176A177ARG10.8660.92172.3804.2634.2630.0000.0000.0000.000
177A178LEU-1-0.902-0.92867.371-4.543-4.5430.0000.0000.0000.000