FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: ZN86N

Calculation Name: 4FIB-C-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4FIB

Chain ID: C

ChEMBL ID:

UniProt ID: O05503

Base Structure: X-ray

Registration Date: 2025-07-09

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 235
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -1004400.352944
FMO2-HF: Nuclear repulsion 955714.612081
FMO2-HF: Total energy -48685.740863
FMO2-MP2: Total energy -48824.386113


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(C:82:MET)


Summations of interaction energy for fragment #1(C:82:MET)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-12.818-8.8160.467-2.074-2.397-0.001
Interaction energy analysis for fragmet #1(C:82:MET)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.175 / q_NPA : 0.046
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4C83LYS10.8441.0623.307-3.577-2.9410.062-0.330-0.3670.001
5C84VAL00.126-0.1143.878-2.230-0.556-0.015-1.034-0.6260.004
6C84VAL0-0.0720.1328.2760.0440.0440.0000.0000.0000.000
7C85GLY0-0.035-0.1217.2680.6280.6280.0000.0000.0000.000
8C86SER0-0.019-0.0133.9670.8820.9180.0010.034-0.0700.000
9C86SER00.0050.0942.9320.2840.6890.412-0.284-0.535-0.003
10C87GLN00.062-0.0775.293-0.506-0.521-0.002-0.0010.0170.000
11C87GLN0-0.0740.0848.787-0.035-0.0350.0000.0000.0000.000
12C88VAL00.039-0.0926.5680.1590.1590.0000.0000.0000.000
13C88VAL0-0.0360.1024.555-0.183-0.149-0.001-0.011-0.0220.000
14C89ILE00.100-0.1057.5440.3320.3320.0000.0000.0000.000
15C89ILE0-0.0920.11410.3530.0440.0440.0000.0000.0000.000
16C90ILE00.119-0.0979.849-0.315-0.3150.0000.0000.0000.000
17C90ILE0-0.1180.11411.0570.0120.0120.0000.0000.0000.000
18C91ASN00.023-0.13311.3880.2530.2530.0000.0000.0000.000
19C91ASN0-0.0380.12311.6670.1600.1600.0000.0000.0000.000
20C92THR00.067-0.08413.0730.0240.0240.0000.0000.0000.000
21C92THR0-0.0580.08312.8410.0570.0570.0000.0000.0000.000
22C93SER0-0.016-0.06215.263-0.019-0.0190.0000.0000.0000.000
23C93SER0-0.0780.03719.503-0.007-0.0070.0000.0000.0000.000
24C94HIS00.218-0.04417.3900.0760.0760.0000.0000.0000.000
25C94HIS10.7300.97414.4880.9120.9120.0000.0000.0000.000
26C95MET00.130-0.05918.8220.0610.0610.0000.0000.0000.000
27C95MET0-0.0800.10219.500-0.010-0.0100.0000.0000.0000.000
28C96LYS00.006-0.15919.997-0.043-0.0430.0000.0000.0000.000
29C96LYS10.9151.09823.8960.3610.3610.0000.0000.0000.000
30C97GLY00.002-0.09720.9900.0040.0040.0000.0000.0000.000
31C98MET00.1410.02516.8440.0190.0190.0000.0000.0000.000
32C98MET0-0.0700.12614.4830.0260.0260.0000.0000.0000.000
33C99LYS00.128-0.08915.770-0.093-0.0930.0000.0000.0000.000
34C99LYS10.7491.03515.7760.7310.7310.0000.0000.0000.000
35C100GLY0-0.089-0.13615.1620.0930.0930.0000.0000.0000.000
36C101ALA00.1380.02615.5390.0440.0440.0000.0000.0000.000
37C101ALA0-0.0920.09915.2150.0050.0050.0000.0000.0000.000
38C102GLU00.079-0.14712.534-0.191-0.1910.0000.0000.0000.000
39C102GLU-1-1.036-0.82713.083-0.452-0.4520.0000.0000.0000.000
40C103ALA00.082-0.11210.9020.1930.1930.0000.0000.0000.000
41C103ALA0-0.1060.0849.973-0.028-0.0280.0000.0000.0000.000
42C104THR00.046-0.0848.943-0.205-0.2050.0000.0000.0000.000
43C104THR0-0.0780.0719.5250.0950.0950.0000.0000.0000.000
44C105VAL00.094-0.1116.4120.3140.3140.0000.0000.0000.000
45C105VAL0-0.0960.1324.463-0.0050.019-0.001-0.009-0.0140.000
46C106THR0-0.035-0.1227.8190.3050.3050.0000.0000.0000.000
47C106THR0-0.0290.08611.912-0.036-0.0360.0000.0000.0000.000
48C107GLY0-0.023-0.1299.6660.2950.2950.0000.0000.0000.000
49C108ALA00.1280.0158.111-0.393-0.3930.0000.0000.0000.000
50C108ALA0-0.0670.0957.355-0.043-0.0430.0000.0000.0000.000
51C109TYR00.000-0.0929.3540.2740.2740.0000.0000.0000.000
52C109TYR0-0.0990.06311.9020.0650.0650.0000.0000.0000.000
53C110ASP00.212-0.08311.549-0.207-0.2070.0000.0000.0000.000
54C110ASP-1-0.979-0.80010.214-0.333-0.3330.0000.0000.0000.000
55C111THR0-0.028-0.06112.3900.0910.0910.0000.0000.0000.000
56C111THR0-0.0580.02513.7650.0010.0010.0000.0000.0000.000
57C112THR00.020-0.10615.141-0.021-0.0210.0000.0000.0000.000
58C112THR0-0.0470.07618.8630.0100.0100.0000.0000.0000.000
59C113ALA00.102-0.08716.0300.0240.0240.0000.0000.0000.000
60C113ALA0-0.0690.10615.186-0.028-0.0280.0000.0000.0000.000
61C114TYR00.090-0.13717.2700.0160.0160.0000.0000.0000.000
62C114TYR0-0.1200.09920.7870.0160.0160.0000.0000.0000.000
63C115VAL00.067-0.09820.166-0.051-0.0510.0000.0000.0000.000
64C115VAL0-0.1360.09919.838-0.003-0.0030.0000.0000.0000.000
65C116VAL00.042-0.06221.8550.0310.0310.0000.0000.0000.000
66C116VAL0-0.0710.07123.3380.0010.0010.0000.0000.0000.000
67C117SER00.084-0.08025.040-0.028-0.0280.0000.0000.0000.000
68C117SER0-0.0450.06427.7200.0030.0030.0000.0000.0000.000
69C118TYR0-0.021-0.13528.0310.0170.0170.0000.0000.0000.000
70C118TYR0-0.0280.11825.5890.0020.0020.0000.0000.0000.000
71C119THR00.038-0.09830.284-0.012-0.0120.0000.0000.0000.000
72C119THR0-0.0410.09134.569-0.001-0.0010.0000.0000.0000.000
73C120PRO00.003-0.08630.4880.0040.0040.0000.0000.0000.000
74C121THR00.0880.00532.3350.0120.0120.0000.0000.0000.000
75C121THR0-0.0330.08433.043-0.002-0.0020.0000.0000.0000.000
76C122ASN0-0.008-0.07734.1550.0130.0130.0000.0000.0000.000
77C122ASN0-0.0780.06432.375-0.004-0.0040.0000.0000.0000.000
78C123GLY00.012-0.08835.7730.0030.0030.0000.0000.0000.000
79C124GLY0-0.037-0.01133.2040.0020.0020.0000.0000.0000.000
80C125GLN00.088-0.01633.3230.0090.0090.0000.0000.0000.000
81C125GLN0-0.0550.10632.2740.0000.0000.0000.0000.0000.000
82C126ARG00.131-0.07631.932-0.011-0.0110.0000.0000.0000.000
83C126ARG10.8601.07231.6690.2250.2250.0000.0000.0000.000
84C127VAL00.037-0.12027.7930.0030.0030.0000.0000.0000.000
85C127VAL0-0.0970.10625.712-0.005-0.0050.0000.0000.0000.000
86C128ASP00.070-0.10127.8640.0040.0040.0000.0000.0000.000
87C128ASP-1-0.973-0.83828.062-0.285-0.2850.0000.0000.0000.000
88C129HIS00.085-0.08824.946-0.016-0.0160.0000.0000.0000.000
89C129HIS0-0.1430.05224.050-0.002-0.0020.0000.0000.0000.000
90C130HIS00.144-0.10222.519-0.036-0.0360.0000.0000.0000.000
91C130HIS0-0.1060.07220.891-0.011-0.0110.0000.0000.0000.000
92C131LYS00.069-0.10218.1080.0320.0320.0000.0000.0000.000
93C131LYS10.8521.06617.0990.6570.6570.0000.0000.0000.000
94C132TRP00.075-0.09816.832-0.008-0.0080.0000.0000.0000.000
95C132TRP0-0.0570.07713.9130.0250.0250.0000.0000.0000.000
96C133VAL0-0.031-0.09418.207-0.028-0.0280.0000.0000.0000.000
97C133VAL0-0.0640.08521.4850.0080.0080.0000.0000.0000.000
98C134ILE00.073-0.08917.5820.0020.0020.0000.0000.0000.000
99C134ILE0-0.0880.09315.497-0.016-0.0160.0000.0000.0000.000
100C135GLN00.194-0.08518.8470.0270.0270.0000.0000.0000.000
101C135GLN0-0.0560.11619.850-0.021-0.0210.0000.0000.0000.000
102C136GLU00.001-0.13819.9640.0430.0430.0000.0000.0000.000
103C136GLU-1-0.872-0.79018.274-0.402-0.4020.0000.0000.0000.000
104C137GLU0-0.016-0.12421.5890.0280.0280.0000.0000.0000.000
105C137GLU-1-0.847-0.76419.517-0.536-0.5360.0000.0000.0000.000
106C138ILE00.094-0.12322.7510.0000.0000.0000.0000.0000.000
107C138ILE0-0.0600.13823.6600.0010.0010.0000.0000.0000.000
108C139LYS00.162-0.07525.7000.0080.0080.0000.0000.0000.000
109C139LYS10.8001.04429.9440.1560.1560.0000.0000.0000.000
110C140ASP00.030-0.12029.067-0.002-0.0020.0000.0000.0000.000
111C140ASP-1-1.036-0.86831.693-0.135-0.1350.0000.0000.0000.000
112C141ALA00.073-0.11426.2040.0200.0200.0000.0000.0000.000
113C141ALA0-0.0310.13925.541-0.006-0.0060.0000.0000.0000.000
114C142GLY0-0.055-0.12426.4740.0120.0120.0000.0000.0000.000
115C143ASP00.0940.01623.598-0.029-0.0290.0000.0000.0000.000
116C143ASP-1-1.010-0.85322.926-0.130-0.1300.0000.0000.0000.000
117C144LYS00.105-0.11924.2460.0040.0040.0000.0000.0000.000
118C144LYS10.8251.06227.9160.1170.1170.0000.0000.0000.000
119C145THR0-0.009-0.01423.493-0.010-0.0100.0000.0000.0000.000
120C145THR0-0.0680.02521.632-0.008-0.0080.0000.0000.0000.000
121C146LEU00.125-0.11824.1970.0240.0240.0000.0000.0000.000
122C146LEU0-0.0590.11224.887-0.003-0.0030.0000.0000.0000.000
123C147GLN00.067-0.15224.977-0.023-0.0230.0000.0000.0000.000
124C147GLN0-0.1050.11828.1870.0090.0090.0000.0000.0000.000
125C148PRO0-0.042-0.13025.394-0.002-0.0020.0000.0000.0000.000
126C149GLY0-0.0130.00327.8090.0180.0180.0000.0000.0000.000
127C150ASP00.1070.01229.8850.0120.0120.0000.0000.0000.000
128C150ASP-1-0.930-0.83429.055-0.175-0.1750.0000.0000.0000.000
129C151GLN00.072-0.12330.514-0.018-0.0180.0000.0000.0000.000
130C151GLN0-0.1090.10133.812-0.001-0.0010.0000.0000.0000.000
131C152VAL00.009-0.11029.3010.0180.0180.0000.0000.0000.000
132C152VAL0-0.0130.10427.281-0.002-0.0020.0000.0000.0000.000
133C153ILE00.084-0.09430.378-0.004-0.0040.0000.0000.0000.000
134C153ILE0-0.0860.09931.0220.0020.0020.0000.0000.0000.000
135C154LEU00.124-0.10426.8580.0000.0000.0000.0000.0000.000
136C154LEU0-0.0630.12525.023-0.007-0.0070.0000.0000.0000.000
137C155GLU00.033-0.15326.1010.0170.0170.0000.0000.0000.000
138C155GLU-1-0.977-0.81026.027-0.205-0.2050.0000.0000.0000.000
139C156ALA00.073-0.12022.9280.0150.0150.0000.0000.0000.000
140C156ALA0-0.0500.13322.319-0.009-0.0090.0000.0000.0000.000
141C157SER0-0.015-0.11023.6430.0130.0130.0000.0000.0000.000
142C157SER0-0.0670.06324.7980.0090.0090.0000.0000.0000.000
143C158HIS00.114-0.07921.4020.0110.0110.0000.0000.0000.000
144C158HIS10.7580.96419.2460.5340.5340.0000.0000.0000.000
145C159MET00.033-0.09422.314-0.015-0.0150.0000.0000.0000.000
146C159MET0-0.0410.12523.402-0.010-0.0100.0000.0000.0000.000
147C160LYS00.054-0.10325.4160.0090.0090.0000.0000.0000.000
148C160LYS10.8951.06229.0420.2430.2430.0000.0000.0000.000
149C161GLY0-0.007-0.10129.041-0.004-0.0040.0000.0000.0000.000
150C162MET00.1760.03526.6810.0170.0170.0000.0000.0000.000
151C162MET0-0.1480.10822.345-0.011-0.0110.0000.0000.0000.000
152C163LYS00.107-0.06828.1520.0000.0000.0000.0000.0000.000
153C163LYS10.8211.04727.8340.2250.2250.0000.0000.0000.000
154C164GLY0-0.052-0.14029.0040.0140.0140.0000.0000.0000.000
155C165ALA00.0710.00230.4180.0190.0190.0000.0000.0000.000
156C165ALA0-0.0540.11029.912-0.003-0.0030.0000.0000.0000.000
157C166THR00.037-0.11130.810-0.010-0.0100.0000.0000.0000.000
158C166THR0-0.0260.08133.6950.0070.0070.0000.0000.0000.000
159C167ALA00.038-0.10728.6170.0060.0060.0000.0000.0000.000
160C167ALA0-0.1030.09328.035-0.006-0.0060.0000.0000.0000.000
161C168GLU00.062-0.13929.9060.0080.0080.0000.0000.0000.000
162C168GLU-1-1.022-0.82630.155-0.201-0.2010.0000.0000.0000.000
163C169ILE00.097-0.11326.309-0.026-0.0260.0000.0000.0000.000
164C169ILE0-0.1410.12124.791-0.002-0.0020.0000.0000.0000.000
165C170ASP00.133-0.09225.7030.0250.0250.0000.0000.0000.000
166C170ASP-1-0.897-0.77425.063-0.296-0.2960.0000.0000.0000.000
167C171SER0-0.019-0.12722.6640.0210.0210.0000.0000.0000.000
168C171SER0-0.0290.07221.694-0.021-0.0210.0000.0000.0000.000
169C172ALA00.118-0.11120.670-0.026-0.0260.0000.0000.0000.000
170C172ALA0-0.0470.13421.5910.0080.0080.0000.0000.0000.000
171C173GLU00.032-0.17016.9990.0600.0600.0000.0000.0000.000
172C173GLU-1-1.005-0.81014.207-0.715-0.7150.0000.0000.0000.000
173C174LYS00.135-0.06215.893-0.051-0.0510.0000.0000.0000.000
174C174LYS10.8211.05514.6230.1430.1430.0000.0000.0000.000
175C175THR0-0.019-0.08711.7760.0660.0660.0000.0000.0000.000
176C175THR0-0.0250.06211.109-0.091-0.0910.0000.0000.0000.000
177C176THR00.092-0.0718.4590.2250.2250.0000.0000.0000.000
178C176THR0-0.0710.0627.324-0.022-0.0220.0000.0000.0000.000
179C177VAL00.001-0.1289.646-0.306-0.3060.0000.0000.0000.000
180C177VAL0-0.1060.11211.9710.0340.0340.0000.0000.0000.000
181C178TYR00.097-0.1037.6500.2340.2340.0000.0000.0000.000
182C178TYR0-0.0720.1104.714-0.449-0.388-0.001-0.017-0.0430.000
183C179MET00.112-0.1059.0260.1740.1740.0000.0000.0000.000
184C179MET0-0.1120.08111.9750.1050.1050.0000.0000.0000.000
185C180VAL0-0.035-0.1129.803-0.243-0.2430.0000.0000.0000.000
186C180VAL0-0.0390.1158.668-0.004-0.0040.0000.0000.0000.000
187C181ASP00.192-0.09511.2840.1410.1410.0000.0000.0000.000
188C181ASP-1-0.915-0.80613.387-0.606-0.6060.0000.0000.0000.000
189C182TYR0-0.017-0.09212.982-0.085-0.0850.0000.0000.0000.000
190C182TYR0-0.0380.09113.6310.0100.0100.0000.0000.0000.000
191C183THR00.045-0.08715.3150.0450.0450.0000.0000.0000.000
192C183THR0-0.0430.06918.3320.0240.0240.0000.0000.0000.000
193C184SER00.152-0.04618.786-0.040-0.0400.0000.0000.0000.000
194C184SER0-0.0670.07421.2330.0040.0040.0000.0000.0000.000
195C185THR0-0.023-0.11120.3810.0450.0450.0000.0000.0000.000
196C185THR0-0.0140.09219.1200.0060.0060.0000.0000.0000.000
197C186THR0-0.012-0.07021.7560.0300.0300.0000.0000.0000.000
198C186THR0-0.0710.04323.2350.0050.0050.0000.0000.0000.000
199C187SER00.019-0.09124.2080.0290.0290.0000.0000.0000.000
200C187SER0-0.0170.08724.513-0.009-0.0090.0000.0000.0000.000
201C188GLY0-0.009-0.07723.8460.0250.0250.0000.0000.0000.000
202C189GLU00.052-0.01523.8240.0140.0140.0000.0000.0000.000
203C189GLU-1-1.024-0.86222.307-0.362-0.3620.0000.0000.0000.000
204C190LYS00.106-0.09320.304-0.040-0.0400.0000.0000.0000.000
205C190LYS10.8321.02720.0170.3050.3050.0000.0000.0000.000
206C191VAL00.123-0.11218.6250.0560.0560.0000.0000.0000.000
207C191VAL0-0.0700.14717.632-0.002-0.0020.0000.0000.0000.000
208C192LYS00.031-0.09917.073-0.064-0.0640.0000.0000.0000.000
209C192LYS10.8341.04317.4490.4270.4270.0000.0000.0000.000
210C193ASN00.090-0.05814.6240.0250.0250.0000.0000.0000.000
211C193ASN0-0.1430.05015.183-0.048-0.0480.0000.0000.0000.000
212C194HIS00.205-0.09914.8040.0790.0790.0000.0000.0000.000
213C194HIS0-0.1240.09913.9430.0600.0600.0000.0000.0000.000
214C195LYS00.053-0.09813.743-0.182-0.1820.0000.0000.0000.000
215C195LYS10.8381.04715.9450.5520.5520.0000.0000.0000.000
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