FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: ZN91N

Calculation Name: 4B0E-A-Xray540

Preferred Name:

Target Type:

Ligand Name:

Ligand 3-letter code:

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 4B0E

Chain ID: A

ChEMBL ID:

UniProt ID: P26949

Base Structure: X-ray

Registration Date: 2025-07-08

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptHSide
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
Remarks
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 178
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -713388.327475
FMO2-HF: Nuclear repulsion 675604.509535
FMO2-HF: Total energy -37783.81794
FMO2-MP2: Total energy -37895.228959


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:28:LEU)


Summations of interaction energy for fragment #1(A:28:LEU)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-7.505-3.4890.733-2.087-2.6640.004
Interaction energy analysis for fragmet #1(A:28:LEU)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.141 / q_NPA : 0.006
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
4A30GLY00.0230.0203.841-3.164-2.444-0.003-0.425-0.2930.002
5A31ASN00.1670.0486.4790.6950.6950.0000.0000.0000.000
6A31ASN0-0.1170.07810.3090.0430.0430.0000.0000.0000.000
7A32TYR00.043-0.1217.925-0.502-0.5020.0000.0000.0000.000
8A32TYR0-0.1130.0732.437-0.6780.7100.323-0.727-0.984-0.006
9A33PHE00.163-0.0638.8770.1950.1950.0000.0000.0000.000
10A33PHE0-0.1070.08912.6190.0120.0120.0000.0000.0000.000
11A34VAL0-0.022-0.13411.654-0.026-0.0260.0000.0000.0000.000
12A34VAL0-0.0580.11910.3930.0280.0280.0000.0000.0000.000
13A35ASN00.178-0.05313.086-0.034-0.0340.0000.0000.0000.000
14A35ASN0-0.1220.05115.820-0.019-0.0190.0000.0000.0000.000
15A36VAL00.106-0.10115.6610.0750.0750.0000.0000.0000.000
16A36VAL0-0.0610.11515.816-0.002-0.0020.0000.0000.0000.000
17A37PHE00.047-0.09917.520-0.050-0.0500.0000.0000.0000.000
18A37PHE0-0.1070.07617.862-0.002-0.0020.0000.0000.0000.000
19A38VAL00.139-0.08719.6620.0480.0480.0000.0000.0000.000
20A38VAL0-0.0570.12921.499-0.001-0.0010.0000.0000.0000.000
21A39ASN00.112-0.06222.442-0.021-0.0210.0000.0000.0000.000
22A39ASN0-0.1210.07524.9960.0180.0180.0000.0000.0000.000
23A40GLY00.013-0.11923.029-0.022-0.0220.0000.0000.0000.000
24A41ARG00.047-0.03124.170-0.010-0.0100.0000.0000.0000.000
25A41ARG10.8531.07425.528-0.137-0.1370.0000.0000.0000.000
26A42LYS00.125-0.07621.6510.0230.0230.0000.0000.0000.000
27A42LYS10.7641.02820.012-0.005-0.0050.0000.0000.0000.000
28A43VAL0-0.031-0.13021.683-0.020-0.0200.0000.0000.0000.000
29A43VAL0-0.0650.11721.3860.0000.0000.0000.0000.0000.000
30A44ASP00.085-0.12320.582-0.015-0.0150.0000.0000.0000.000
31A44ASP-1-0.829-0.77819.599-0.044-0.0440.0000.0000.0000.000
32A45SER0-0.009-0.08917.6350.0400.0400.0000.0000.0000.000
33A45SER0-0.0650.08118.4090.0080.0080.0000.0000.0000.000
34A46GLY00.000-0.10116.166-0.016-0.0160.0000.0000.0000.000
35A47ASN00.1350.06113.0180.0430.0430.0000.0000.0000.000
36A47ASN0-0.1120.05913.5060.0540.0540.0000.0000.0000.000
37A48ILE00.029-0.10811.8080.0100.0100.0000.0000.0000.000
38A48ILE0-0.0720.10111.7760.0260.0260.0000.0000.0000.000
39A49ASP00.101-0.1189.957-0.152-0.1520.0000.0000.0000.000
40A49ASP-1-0.968-0.8369.958-0.691-0.6910.0000.0000.0000.000
41A50PHE00.053-0.0957.4640.1330.1330.0000.0000.0000.000
42A50PHE0-0.1000.0806.5970.1760.1760.0000.0000.0000.000
43A51ARG00.093-0.0847.103-0.455-0.4550.0000.0000.0000.000
44A51ARG10.8081.0159.226-0.549-0.5490.0000.0000.0000.000
45A52LEU00.143-0.0877.2130.3700.3700.0000.0000.0000.000
46A52LEU0-0.1060.0874.503-0.0530.013-0.001-0.007-0.0590.000
47A53GLU00.037-0.1247.779-0.362-0.3620.0000.0000.0000.000
48A53GLU-1-0.922-0.78811.2300.6160.6160.0000.0000.0000.000
49A54LYS00.133-0.07211.3760.2490.2490.0000.0000.0000.000
50A54LYS10.7611.01412.937-1.032-1.0320.0000.0000.0000.000
51A55HIS00.083-0.09413.523-0.151-0.1510.0000.0000.0000.000
52A55HIS0-0.0660.11514.786-0.025-0.0250.0000.0000.0000.000
53A56ASN00.097-0.08016.3310.0540.0540.0000.0000.0000.000
54A56ASN0-0.1190.07219.472-0.032-0.0320.0000.0000.0000.000
55A57GLY00.031-0.12217.021-0.005-0.0050.0000.0000.0000.000
56A58LYS00.0560.00114.077-0.001-0.0010.0000.0000.0000.000
57A58LYS10.8931.08314.118-0.815-0.8150.0000.0000.0000.000
58A59GLU00.084-0.1099.770-0.210-0.2100.0000.0000.0000.000
59A59GLU-1-0.928-0.7948.5931.4091.4090.0000.0000.0000.000
60A60LEU00.026-0.1078.7420.3170.3170.0000.0000.0000.000
61A60LEU0-0.0860.09810.190-0.067-0.0670.0000.0000.0000.000
62A61LEU00.105-0.0896.443-0.287-0.2870.0000.0000.0000.000
63A61LEU0-0.0780.0933.033-2.394-1.0610.331-0.752-0.9120.009
64A62TRP00.095-0.1417.594-0.242-0.2420.0000.0000.0000.000
65A62TRP0-0.0460.14711.4160.0260.0260.0000.0000.0000.000
66A63PRO0-0.041-0.10910.545-0.111-0.1110.0000.0000.0000.000
67A64CYS00.120-0.01812.1110.0510.0510.0000.0000.0000.000
68A64CYS0-0.2600.16913.663-0.033-0.0330.0000.0000.0000.000
69A65LEU00.028-0.11014.487-0.084-0.0840.0000.0000.0000.000
70A65LEU0-0.0780.08515.2740.0010.0010.0000.0000.0000.000
71A66SER00.159-0.03817.5090.0290.0290.0000.0000.0000.000
72A66SER0-0.0620.05420.332-0.008-0.0080.0000.0000.0000.000
73A67SER00.078-0.09820.8380.0220.0220.0000.0000.0000.000
74A67SER0-0.0290.06525.175-0.005-0.0050.0000.0000.0000.000
75A68LEU00.111-0.07124.1760.0120.0120.0000.0000.0000.000
76A68LEU0-0.0800.11523.945-0.003-0.0030.0000.0000.0000.000
77A69GLN00.083-0.12820.347-0.006-0.0060.0000.0000.0000.000
78A69GLN0-0.0470.14116.584-0.001-0.0010.0000.0000.0000.000
79A70LEU00.017-0.11221.8280.0030.0030.0000.0000.0000.000
80A70LEU0-0.0230.13320.2150.0040.0040.0000.0000.0000.000
81A71THR00.065-0.07522.8740.0120.0120.0000.0000.0000.000
82A71THR0-0.0430.08126.604-0.001-0.0010.0000.0000.0000.000
83A72LYS00.062-0.08724.2450.0040.0040.0000.0000.0000.000
84A72LYS10.7721.01121.5120.0450.0450.0000.0000.0000.000
85A73TYR0-0.038-0.14822.327-0.015-0.0150.0000.0000.0000.000
86A73TYR0-0.0410.09718.1220.0080.0080.0000.0000.0000.000
87A74GLY0-0.005-0.10723.6340.0130.0130.0000.0000.0000.000
88A75ILE00.0980.02225.347-0.002-0.0020.0000.0000.0000.000
89A75ILE0-0.1090.08322.5510.0060.0060.0000.0000.0000.000
90A76ASP00.132-0.11626.706-0.012-0.0120.0000.0000.0000.000
91A76ASP-1-0.941-0.80430.8920.0940.0940.0000.0000.0000.000
92A77ILE00.070-0.12227.7670.0130.0130.0000.0000.0000.000
93A77ILE0-0.0730.09825.9030.0020.0020.0000.0000.0000.000
94A78ASP00.127-0.10928.4750.0110.0110.0000.0000.0000.000
95A78ASP-1-1.005-0.83032.3350.0700.0700.0000.0000.0000.000
96A79LYS00.035-0.11431.533-0.004-0.0040.0000.0000.0000.000
97A79LYS10.7550.99931.441-0.102-0.1020.0000.0000.0000.000
98A80TYR0-0.030-0.09128.5710.0010.0010.0000.0000.0000.000
99A80TYR0-0.0840.08327.8330.0080.0080.0000.0000.0000.000
100A81PRO00.128-0.07428.4760.0060.0060.0000.0000.0000.000
101A82ASP00.0970.00527.962-0.011-0.0110.0000.0000.0000.000
102A82ASP-1-0.941-0.80227.4850.1620.1620.0000.0000.0000.000
103A83LEU00.084-0.10024.2670.0180.0180.0000.0000.0000.000
104A83LEU0-0.1220.06623.120-0.001-0.0010.0000.0000.0000.000
105A84ILE00.086-0.08123.7930.0160.0160.0000.0000.0000.000
106A84ILE0-0.0790.09125.227-0.003-0.0030.0000.0000.0000.000
107A85LYS00.085-0.05625.694-0.003-0.0030.0000.0000.0000.000
108A85LYS10.7970.99929.108-0.129-0.1290.0000.0000.0000.000
109A86SER0-0.071-0.11724.917-0.014-0.0140.0000.0000.0000.000
110A86SER00.0230.08524.275-0.005-0.0050.0000.0000.0000.000
111A87GLY00.017-0.09121.7440.0360.0360.0000.0000.0000.000
112A88THR0-0.0430.00621.866-0.015-0.0150.0000.0000.0000.000
113A88THR0-0.0290.06020.765-0.016-0.0160.0000.0000.0000.000
114A89GLU00.135-0.09322.5730.0210.0210.0000.0000.0000.000
115A89GLU-1-0.922-0.79625.3740.0360.0360.0000.0000.0000.000
116A90GLN00.011-0.12120.8310.0010.0010.0000.0000.0000.000
117A90GLN0-0.0420.10019.9480.0130.0130.0000.0000.0000.000
118A91CYS0-0.001-0.10417.650-0.027-0.0270.0000.0000.0000.000
119A92VAL00.164-0.03318.7720.0140.0140.0000.0000.0000.000
120A92VAL0-0.0920.07019.917-0.001-0.0010.0000.0000.0000.000
121A93ASP00.080-0.14019.1010.0450.0450.0000.0000.0000.000
122A93ASP-1-0.917-0.79720.6110.3560.3560.0000.0000.0000.000
123A94LEU00.055-0.09318.861-0.040-0.0400.0000.0000.0000.000
124A94LEU0-0.0980.07116.2550.0060.0060.0000.0000.0000.000
125A95LEU00.031-0.11220.248-0.010-0.0100.0000.0000.0000.000
126A95LEU0-0.0560.10118.3470.0090.0090.0000.0000.0000.000
127A96ALA00.113-0.07621.483-0.003-0.0030.0000.0000.0000.000
128A96ALA0-0.0790.10324.580-0.007-0.0070.0000.0000.0000.000
129A97ILE00.023-0.13123.933-0.031-0.0310.0000.0000.0000.000
130A97ILE0-0.1140.09123.267-0.005-0.0050.0000.0000.0000.000
131A98PRO0-0.018-0.08624.7270.0290.0290.0000.0000.0000.000
132A99HIS00.0590.04226.116-0.006-0.0060.0000.0000.0000.000
133A99HIS0-0.1330.05427.8580.0080.0080.0000.0000.0000.000
134A100SER00.058-0.08923.100-0.023-0.0230.0000.0000.0000.000
135A100SER0-0.0350.04522.4360.0100.0100.0000.0000.0000.000
136A101ASP00.072-0.10919.7550.0170.0170.0000.0000.0000.000
137A101ASP-1-1.015-0.86519.2320.4980.4980.0000.0000.0000.000
138A102VAL00.079-0.12616.292-0.069-0.0690.0000.0000.0000.000
139A102VAL0-0.0920.11714.195-0.002-0.0020.0000.0000.0000.000
140A103GLN00.090-0.10913.6730.1200.1200.0000.0000.0000.000
141A103GLN0-0.1060.09313.3790.1220.1220.0000.0000.0000.000
142A104PHE00.132-0.0799.755-0.268-0.2680.0000.0000.0000.000
143A104PHE0-0.0640.1045.6130.0500.0500.0000.0000.0000.000
144A105TYR00.056-0.08310.2180.3290.3290.0000.0000.0000.000
145A105TYR0-0.1630.06012.799-0.023-0.0230.0000.0000.0000.000
146A106PHE00.213-0.0946.971-0.403-0.4030.0000.0000.0000.000
147A106PHE0-0.0990.1152.8930.1160.6250.083-0.176-0.416-0.001
148A107ASN00.095-0.0738.123-0.324-0.3240.0000.0000.0000.000
149A107ASN0-0.0960.0569.4740.1540.1540.0000.0000.0000.000
150A108GLN00.034-0.08910.506-0.151-0.1510.0000.0000.0000.000
151A108GLN0-0.0760.06713.612-0.012-0.0120.0000.0000.0000.000
152A109GLN00.073-0.09010.481-0.023-0.0230.0000.0000.0000.000
153A109GLN0-0.1310.0939.776-0.059-0.0590.0000.0000.0000.000
154A110LYS00.164-0.06911.480-0.114-0.1140.0000.0000.0000.000
155A110LYS10.7971.04614.089-0.299-0.2990.0000.0000.0000.000
156A111LEU00.123-0.09712.5600.1750.1750.0000.0000.0000.000
157A111LEU0-0.0900.12112.451-0.011-0.0110.0000.0000.0000.000
158A112SER00.034-0.08113.899-0.108-0.1080.0000.0000.0000.000
159A112SER0-0.0720.04816.830-0.016-0.0160.0000.0000.0000.000
160A113LEU00.042-0.08716.8880.0940.0940.0000.0000.0000.000
161A113LEU0-0.0560.09516.642-0.009-0.0090.0000.0000.0000.000
162A114ILE00.057-0.11819.266-0.050-0.0500.0000.0000.0000.000
163A114ILE0-0.0660.12320.458-0.002-0.0020.0000.0000.0000.000
164A115VAL00.093-0.08322.3280.0320.0320.0000.0000.0000.000
165A115VAL0-0.0360.11522.866-0.003-0.0030.0000.0000.0000.000
166A116PRO00.057-0.06525.072-0.016-0.0160.0000.0000.0000.000
167A117PRO00.025-0.01028.665-0.007-0.0070.0000.0000.0000.000
168A118GLN00.0780.01231.148-0.010-0.0100.0000.0000.0000.000
169A118GLN0-0.0240.11131.813-0.002-0.0020.0000.0000.0000.000
170A119ALA00.023-0.12328.120-0.015-0.0150.0000.0000.0000.000
171A119ALA0-0.0280.11227.4730.0050.0050.0000.0000.0000.000
172A120LEU00.067-0.09328.7710.0010.0010.0000.0000.0000.000
173A120LEU0-0.1050.08426.9700.0020.0020.0000.0000.0000.000
174A121LEU00.078-0.10229.884-0.002-0.0020.0000.0000.0000.000
175A121LEU0-0.1310.09829.155-0.004-0.0040.0000.0000.0000.000
176A122PRO0-0.012-0.10831.9080.0010.0010.0000.0000.0000.000
177A123ARG0-0.027-0.00632.5790.0000.0000.0000.0000.0000.000
178A123ARG10.8730.95427.489-0.054-0.0540.0000.0000.0000.000