FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: ZP3LX

Calculation Name: 3UU7-B-Xray7

Preferred Name: Estrogen receptor alpha

Target Type: SINGLE PROTEIN

Ligand Name: 4,4'-propane-2,2-diyldiphenol

ligand 3-letter code: 2OH

PDB ID: 3UU7

Chain ID: B

ChEMBL ID: CHEMBL206

UniProt ID: P03372

Base Structure: X-ray

Registration Date: 2017-02-24

Reference:

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement BioStationViewer:StructureComplemation (agonist templeate: 1A52)
Water A bridging water among Glu353, Arg394 and ligand are complementated by template structure (PDBID: 2YJA).
Procedure Manual calculation
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 238
LigandResidueName 2OH
LigandFragmentNumber 237
LigandCharge 2OH=0
Software MIZUHO/ABINIT-MP 4.0(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -3113731.775916
FMO2-HF: Nuclear repulsion 3015864.321664
FMO2-HF: Total energy -97867.454252
FMO2-MP2: Total energy -98143.163694


3D Structure
Snapshot
 
Ligand structure

2OH

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-87.256-53.41638.376-22.149-50.0690.062


Interactive mode: IFIE and PIEDA for fragment #237(B:1:2OH)


Summations of interaction energy for fragment #237(B:1:2OH)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-87.256-53.41638.376-22.149-50.069-0.062
Interaction energy analysis for fragmet #237(B:1:2OH)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : -0.059 / q_NPA : ******
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
1B309SER10.88030.822-0.049-0.0490.0000.0000.0000.000
2B310LEU00.08926.2820.0010.0010.0000.0000.0000.000
3B311THR00.06530.1090.0080.0080.0000.0000.0000.000
4B312ALA00.07727.7520.0000.0000.0000.0000.0000.000
5B313ASP-1-0.82426.4240.1580.1580.0000.0000.0000.000
6B314GLN0-0.00926.184-0.001-0.0010.0000.0000.0000.000
7B315MET00.03422.874-0.017-0.0170.0000.0000.0000.000
8B316VAL00.03321.8490.0050.0050.0000.0000.0000.000
9B317SER0-0.02921.2960.0070.0070.0000.0000.0000.000
10B318ALA0-0.00421.785-0.012-0.0120.0000.0000.0000.000
11B319LEU0-0.00217.810-0.022-0.0220.0000.0000.0000.000
12B320LEU0-0.02617.0820.0000.0000.0000.0000.0000.000
13B321ASP-1-0.93317.501-0.032-0.0320.0000.0000.0000.000
14B322ALA0-0.06116.658-0.046-0.0460.0000.0000.0000.000
15B323GLU-1-0.82212.1610.3230.3230.0000.0000.0000.000
16B324PRO0-0.0379.418-0.063-0.0630.0000.0000.0000.000
17B325PRO0-0.01511.0870.1070.1070.0000.0000.0000.000
18B326ILE00.0108.018-0.197-0.1970.0000.0000.0000.000
19B327LEU0-0.0397.0680.1760.1760.0000.0000.0000.000
20B328TYR00.0278.1640.1150.1150.0000.0000.0000.000
21B329SER00.0327.774-0.365-0.3650.0000.0000.0000.000
22B330GLU-1-0.7909.156-0.600-0.6000.0000.0000.0000.000
23B331TYR0-0.02612.2630.0850.0850.0000.0000.0000.000
24B332ASP-1-0.90014.849-0.063-0.0630.0000.0000.0000.000
25B333PRO0-0.01515.6300.0560.0560.0000.0000.0000.000
26B334THR0-0.04718.1260.0640.0640.0000.0000.0000.000
27B335ARG10.87112.2030.3420.3420.0000.0000.0000.000
28B336PRO0-0.02914.3290.0160.0160.0000.0000.0000.000
29B337PHE00.06111.1330.0100.0100.0000.0000.0000.000
30B338SER0-0.05613.6110.0330.0330.0000.0000.0000.000
31B339GLU-1-0.7349.331-0.448-0.4480.0000.0000.0000.000
32B340ALA00.0339.328-0.027-0.0270.0000.0000.0000.000
33B341SER0-0.0469.751-0.044-0.0440.0000.0000.0000.000
34B342MET0-0.0046.538-0.153-0.1530.0000.0000.0000.000
35B343MET00.0613.011-0.9970.2940.129-0.297-1.1230.002
36B344GLY00.0395.077-0.642-0.514-0.001-0.002-0.1250.000
37B345LEU0-0.0527.096-0.333-0.3330.0000.0000.0000.000
38B346LEU0-0.0321.851-1.372-2.0555.613-1.328-3.6020.005
39B347THR00.0262.460-7.329-4.8112.372-1.366-3.524-0.018
40B348ASN00.0413.311-0.246-0.4910.0130.455-0.2230.000
41B349LEU0-0.0513.057-0.3260.7700.100-0.202-0.9940.000
42B350ALA00.0452.149-1.539-2.1996.492-1.892-3.9400.003
43B351ASP-1-0.8743.383-0.490-0.3510.0780.140-0.3570.000
44B352ARG10.8546.9582.3512.3510.0000.0000.0000.000
45B353GLU-1-0.7802.328-23.508-17.8142.566-4.208-4.053-0.057
46B354LEU00.0385.7920.8010.8010.0000.0000.0000.000
47B355VAL00.0208.4930.3700.3700.0000.0000.0000.000
48B356HIS0-0.0279.3920.3490.3490.0000.0000.0000.000
49B357MET0-0.0187.4130.2140.2140.0000.0000.0000.000
50B358ILE00.04810.5820.1870.1870.0000.0000.0000.000
51B359ASN0-0.09813.8660.1550.1550.0000.0000.0000.000
52B360TRP00.02212.3390.0840.0840.0000.0000.0000.000
53B361ALA00.05314.2920.0720.0720.0000.0000.0000.000
54B362LYS10.89615.8790.3520.3520.0000.0000.0000.000
55B363ARG10.85217.7210.1180.1180.0000.0000.0000.000
56B364VAL0-0.00616.3440.0440.0440.0000.0000.0000.000
57B365PRO0-0.03319.356-0.019-0.0190.0000.0000.0000.000
58B366GLY00.01922.9730.0220.0220.0000.0000.0000.000
59B367PHE00.04617.394-0.006-0.0060.0000.0000.0000.000
60B368VAL0-0.03021.920-0.021-0.0210.0000.0000.0000.000
61B369ASP-1-0.93923.894-0.041-0.0410.0000.0000.0000.000
62B370LEU0-0.04621.9540.0050.0050.0000.0000.0000.000
63B371THR0-0.01525.223-0.027-0.0270.0000.0000.0000.000
64B372LEU00.01920.9130.0010.0010.0000.0000.0000.000
65B373HIS00.01821.109-0.029-0.0290.0000.0000.0000.000
66B374ASP-1-0.83420.838-0.120-0.1200.0000.0000.0000.000
67B375GLN0-0.10319.165-0.013-0.0130.0000.0000.0000.000
68B376VAL0-0.01216.5260.0030.0030.0000.0000.0000.000
69B377HIS0-0.00315.848-0.055-0.0550.0000.0000.0000.000
70B378LEU0-0.07115.8560.0090.0090.0000.0000.0000.000
71B379LEU0-0.00312.2470.0640.0640.0000.0000.0000.000
72B380GLU-1-0.88711.458-0.482-0.4820.0000.0000.0000.000
73B381CYS0-0.13011.356-0.003-0.0030.0000.0000.0000.000
74B382ALA00.05011.2870.0630.0630.0000.0000.0000.000
75B383TRP00.0363.097-0.3070.4120.064-0.115-0.6670.000
76B384LEU00.0142.600-0.9140.3680.599-0.309-1.571-0.001
77B385GLU-1-0.8385.6511.7411.7410.0000.0000.0000.000
78B386ILE0-0.0297.4880.4220.4220.0000.0000.0000.000
79B387LEU0-0.0073.055-3.147-0.0621.156-0.935-3.3060.009
80B388MET0-0.0323.2170.7812.2660.063-0.328-1.220-0.001
81B389ILE0-0.0074.1100.0230.1080.000-0.003-0.0820.000
82B390GLY00.0296.051-0.391-0.3910.0000.0000.0000.000
83B391LEU00.0052.515-4.228-1.7160.966-1.039-2.4390.011
84B392VAL0-0.0264.724-1.470-1.3490.000-0.015-0.1050.000
85B393TRP0-0.0087.828-0.395-0.3950.0000.0000.0000.000
86B394ARG10.8212.545-2.585-1.5590.154-0.427-0.7530.004
87B395SER0-0.0607.464-0.233-0.2330.0000.0000.0000.000
88B396MET0-0.06210.034-0.116-0.1160.0000.0000.0000.000
89B397GLU-1-0.95413.1600.6940.6940.0000.0000.0000.000
90B398HIS0-0.05812.707-0.124-0.1240.0000.0000.0000.000
91B399PRO00.03014.0040.1680.1680.0000.0000.0000.000
92B400GLY0-0.04814.299-0.088-0.0880.0000.0000.0000.000
93B401LYS10.89911.814-0.970-0.9700.0000.0000.0000.000
94B402LEU00.0445.7670.0500.0500.0000.0000.0000.000
95B403LEU0-0.0207.807-0.219-0.2190.0000.0000.0000.000
96B404PHE00.0252.584-4.838-1.1102.513-1.343-4.8990.016
97B405ALA00.0424.702-1.961-1.868-0.001-0.006-0.0860.000
98B406PRO0-0.0017.4960.3770.3770.0000.0000.0000.000
99B407ASN0-0.05510.8490.0520.0520.0000.0000.0000.000
100B408LEU0-0.0186.775-0.096-0.0960.0000.0000.0000.000
101B409LEU0-0.0018.8460.3590.3590.0000.0000.0000.000
102B410LEU0-0.0206.543-0.216-0.2160.0000.0000.0000.000
103B411ASP-1-0.83310.2401.3561.3560.0000.0000.0000.000
104B412ARG10.9189.784-1.109-1.1090.0000.0000.0000.000
105B413ASN0-0.06010.4220.0000.0000.0000.0000.0000.000
106B414GLN00.0849.934-0.048-0.0480.0000.0000.0000.000
107B415GLY00.0346.8210.0030.0030.0000.0000.0000.000
108B416LYS10.9087.734-0.926-0.9260.0000.0000.0000.000
109B417CYS0-0.10410.211-0.211-0.2110.0000.0000.0000.000
110B418VAL0-0.0185.231-0.197-0.1970.0000.0000.0000.000
111B419GLU-1-0.9337.598-0.217-0.2170.0000.0000.0000.000
112B420GLY00.0416.596-0.635-0.6350.0000.0000.0000.000
113B421MET0-0.0372.414-3.922-2.0352.970-1.296-3.5610.017
114B422VAL0-0.0164.4971.6171.691-0.001-0.008-0.0660.000
115B423GLU-1-0.8617.4690.8410.8410.0000.0000.0000.000
116B424ILE00.0012.280-1.673-1.4483.571-1.069-2.7270.011
117B425PHE00.0283.373-0.711-0.2570.007-0.056-0.4060.000
118B426ASP-1-0.8176.4331.2881.2880.0000.0000.0000.000
119B427MET0-0.0587.295-0.406-0.4060.0000.0000.0000.000
120B428LEU00.0574.285-0.651-0.3810.000-0.019-0.2520.000
121B429LEU0-0.0178.579-0.403-0.4030.0000.0000.0000.000
122B430ALA0-0.03111.083-0.302-0.3020.0000.0000.0000.000
123B431THR0-0.02210.112-0.286-0.2860.0000.0000.0000.000
124B432SER00.00910.239-0.286-0.2860.0000.0000.0000.000
125B433SER00.00411.974-0.259-0.2590.0000.0000.0000.000
126B434ARG10.92815.196-0.899-0.8990.0000.0000.0000.000
127B435PHE00.06111.041-0.145-0.1450.0000.0000.0000.000
128B436ARG11.00415.616-0.893-0.8930.0000.0000.0000.000
129B437MET0-0.08217.463-0.108-0.1080.0000.0000.0000.000
130B438MET0-0.06418.776-0.058-0.0580.0000.0000.0000.000
131B439ASN00.00120.095-0.037-0.0370.0000.0000.0000.000
132B440LEU0-0.04514.450-0.054-0.0540.0000.0000.0000.000
133B441GLN00.03318.016-0.014-0.0140.0000.0000.0000.000
134B442GLY00.06016.0600.0450.0450.0000.0000.0000.000
135B443GLU-1-0.88116.8480.3510.3510.0000.0000.0000.000
136B444GLU-1-0.75718.7990.4970.4970.0000.0000.0000.000
137B445PHE0-0.0079.5900.0370.0370.0000.0000.0000.000
138B446VAL00.01114.3470.0500.0500.0000.0000.0000.000
139B447CYS0-0.03515.574-0.054-0.0540.0000.0000.0000.000
140B448LEU0-0.00714.572-0.020-0.0200.0000.0000.0000.000
141B449LYS10.8419.882-0.510-0.5100.0000.0000.0000.000
142B450SER0-0.01313.354-0.059-0.0590.0000.0000.0000.000
143B451ILE00.02416.276-0.051-0.0510.0000.0000.0000.000
144B452ILE0-0.02611.038-0.041-0.0410.0000.0000.0000.000
145B453LEU0-0.03414.421-0.056-0.0560.0000.0000.0000.000
146B454LEU00.01115.309-0.068-0.0680.0000.0000.0000.000
147B455ASN00.02917.736-0.077-0.0770.0000.0000.0000.000
148B456SER0-0.07013.809-0.030-0.0300.0000.0000.0000.000
149B457GLY00.09116.507-0.033-0.0330.0000.0000.0000.000
150B458VAL00.01117.840-0.041-0.0410.0000.0000.0000.000
151B459TYR0-0.04521.190-0.029-0.0290.0000.0000.0000.000
152B460THR0-0.01518.550-0.004-0.0040.0000.0000.0000.000
153B461PHE00.04421.281-0.023-0.0230.0000.0000.0000.000
154B462LEU00.06123.9450.0200.0200.0000.0000.0000.000
155B463SER00.00027.0630.0000.0000.0000.0000.0000.000
156B464SER0-0.02829.7910.0080.0080.0000.0000.0000.000
157B465THR00.00532.0950.0020.0020.0000.0000.0000.000
158B466LEU00.04633.2510.0040.0040.0000.0000.0000.000
159B467LYS10.95630.5790.0850.0850.0000.0000.0000.000
160B468SER0-0.04928.7400.0050.0050.0000.0000.0000.000
161B469LEU0-0.03129.5760.0080.0080.0000.0000.0000.000
162B470GLU-1-0.92531.301-0.019-0.0190.0000.0000.0000.000
163B471GLU-1-0.76927.028-0.077-0.0770.0000.0000.0000.000
164B472LYS10.82525.4920.0150.0150.0000.0000.0000.000
165B473ASP-1-0.86827.4770.0560.0560.0000.0000.0000.000
166B474HIS0-0.03126.1080.0220.0220.0000.0000.0000.000
167B475ILE00.04222.1360.0150.0150.0000.0000.0000.000
168B476HIS00.00324.8220.0360.0360.0000.0000.0000.000
169B477ARG10.90826.686-0.035-0.0350.0000.0000.0000.000
170B478VAL0-0.04023.2870.0120.0120.0000.0000.0000.000
171B479LEU0-0.00420.3100.0260.0260.0000.0000.0000.000
172B480ASP-1-0.88923.9440.1710.1710.0000.0000.0000.000
173B481LYS10.80326.221-0.101-0.1010.0000.0000.0000.000
174B482ILE0-0.01820.1080.0080.0080.0000.0000.0000.000
175B483THR0-0.02223.6980.0390.0390.0000.0000.0000.000
176B484ASP-1-0.92324.9810.1710.1710.0000.0000.0000.000
177B485THR0-0.09923.692-0.006-0.0060.0000.0000.0000.000
178B486LEU00.02519.9850.0080.0080.0000.0000.0000.000
179B487ILE00.01124.0670.0080.0080.0000.0000.0000.000
180B488HIS0-0.04527.402-0.006-0.0060.0000.0000.0000.000
181B489LEU0-0.02422.204-0.011-0.0110.0000.0000.0000.000
182B490MET0-0.02823.053-0.005-0.0050.0000.0000.0000.000
183B491ALA0-0.00427.349-0.006-0.0060.0000.0000.0000.000
184B492LYS10.89427.901-0.198-0.1980.0000.0000.0000.000
185B493ALA0-0.03227.075-0.008-0.0080.0000.0000.0000.000
186B494GLY0-0.01229.2140.0040.0040.0000.0000.0000.000
187B495LEU0-0.04527.124-0.002-0.0020.0000.0000.0000.000
188B496THR00.02231.331-0.012-0.0120.0000.0000.0000.000
189B497LEU00.07832.2380.0140.0140.0000.0000.0000.000
190B498GLN0-0.01732.175-0.002-0.0020.0000.0000.0000.000
191B499GLN0-0.00229.6320.0150.0150.0000.0000.0000.000
192B500GLN00.00528.1170.0250.0250.0000.0000.0000.000
193B501HIS00.09227.2160.0100.0100.0000.0000.0000.000
194B502GLN0-0.05627.152-0.003-0.0030.0000.0000.0000.000
195B503ARG10.76221.034-0.486-0.4860.0000.0000.0000.000
196B504LEU00.03322.6860.0460.0460.0000.0000.0000.000
197B505ALA00.01822.3760.0300.0300.0000.0000.0000.000
198B506GLN0-0.04421.5680.0610.0610.0000.0000.0000.000
199B507LEU00.01017.7780.0700.0700.0000.0000.0000.000
200B508LEU00.04317.4320.0770.0770.0000.0000.0000.000
201B509LEU0-0.03018.3270.0220.0220.0000.0000.0000.000
202B510ILE0-0.04913.4870.0260.0260.0000.0000.0000.000
203B511LEU00.04313.6030.1490.1490.0000.0000.0000.000
204B512SER0-0.03214.2030.0140.0140.0000.0000.0000.000
205B513HIS00.00613.7410.0220.0220.0000.0000.0000.000
206B514ILE00.0148.7590.1520.1520.0000.0000.0000.000
207B515ARG10.92610.040-0.190-0.1900.0000.0000.0000.000
208B516HIS0-0.07511.490-0.258-0.2580.0000.0000.0000.000
209B517MET0-0.0107.761-0.009-0.0090.0000.0000.0000.000
210B518SER00.0757.0310.1550.1550.0000.0000.0000.000
211B519ASN00.0287.143-0.616-0.6160.0000.0000.0000.000
212B520LYS10.9097.043-0.555-0.5550.0000.0000.0000.000
213B521GLY00.0173.430-0.865-0.3710.026-0.155-0.3640.001
214B522MET00.0203.219-5.301-3.9910.057-0.596-0.772-0.006
215B523GLU-1-0.9265.832-1.542-1.5420.0000.0000.0000.000
216B524HIS0-0.0092.041-18.068-16.0496.718-3.907-4.830-0.055
217B525LEU00.0282.757-2.1010.0740.490-0.516-2.149-0.003
218B526TYR00.0684.2481.0761.1970.001-0.026-0.0950.000
219B527SER0-0.0466.9000.5380.5380.0000.0000.0000.000
220B528MET0-0.0255.0680.7980.7980.0000.0000.0000.000
221B529LYS10.9807.9681.6851.6850.0000.0000.0000.000
222B530CYS0-0.08410.0140.3270.3270.0000.0000.0000.000
223B531LYS10.81810.7710.8810.8810.0000.0000.0000.000
224B532ASN0-0.03312.5310.0840.0840.0000.0000.0000.000
225B533VAL0-0.0569.3640.1250.1250.0000.0000.0000.000
226B534VAL00.0197.0720.1500.1500.0000.0000.0000.000
227B535PRO0-0.0559.714-0.153-0.1530.0000.0000.0000.000
228B536LEU00.0126.112-0.155-0.1550.0000.0000.0000.000
229B537SER0-0.0178.4970.1620.1620.0000.0000.0000.000
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