FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-04-23

All entries: 37539

Number of unique PDB entries: 7791

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FMODB ID: ZYQ2N

Calculation Name: 4NUX-A-Xray372

Preferred Name: Interleukin-17 receptor A

Target Type: SINGLE PROTEIN

Ligand Name:

ligand 3-letter code:

PDB ID: 4NUX

Chain ID: A

ChEMBL ID: CHEMBL3580485

UniProt ID: Q96F46

Base Structure: X-ray

Registration Date: 2023-06-20

Reference: C. Watanabe, N. Tani, K. Kamisaka, T. Honma et al., Interaction energy analysis of Apo structure dataset on FMODB, To be published.

DOI:

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptH
Protonation MOE:Protonate 3D
Complement MOE:Structure Preparation
Water No
Procedure Auto-FMO protocol ver. 2.20220422
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 201
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23Q2 / 20200603(SMP)
Total energy (hartree)
FMO2-HF: Electronic energy -2437131.07742
FMO2-HF: Nuclear repulsion 2354675.889307
FMO2-HF: Total energy -82455.188114
FMO2-MP2: Total energy -82690.19498


3D Structure
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:376:LYS)


Summations of interaction energy for fragment #1(A:376:LYS)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-92.571-91.1930.005-0.612-0.770
Interaction energy analysis for fragmet #1(A:376:LYS)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 1 / q_Mulliken : 0.930 / q_NPA : 0.941
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A378ARG10.9540.9873.50823.13824.5160.005-0.612-0.7700.000
4A379LYS11.0201.0186.00231.49631.4960.0000.0000.0000.000
5A380VAL0-0.002-0.0067.4081.2671.2670.0000.0000.0000.000
6A381TRP00.0260.01011.1290.1200.1200.0000.0000.0000.000
7A382ILE0-0.014-0.00714.1870.6950.6950.0000.0000.0000.000
8A383ILE0-0.0240.00317.4280.3200.3200.0000.0000.0000.000
9A384TYR0-0.048-0.06720.6580.5540.5540.0000.0000.0000.000
10A385SER00.004-0.00923.8960.0050.0050.0000.0000.0000.000
11A386ALA00.0470.01827.2580.0640.0640.0000.0000.0000.000
12A387ASP-1-0.759-0.86528.472-9.655-9.6550.0000.0000.0000.000
13A388HIS00.0870.03931.0420.1340.1340.0000.0000.0000.000
14A389PRO00.0310.02730.828-0.299-0.2990.0000.0000.0000.000
15A390LEU0-0.028-0.02729.988-0.274-0.2740.0000.0000.0000.000
16A391TYR00.0040.01726.415-0.281-0.2810.0000.0000.0000.000
17A392VAL00.0440.01425.617-0.409-0.4090.0000.0000.0000.000
18A393ASP-1-0.881-0.93825.158-11.339-11.3390.0000.0000.0000.000
19A394VAL00.0010.00725.183-0.346-0.3460.0000.0000.0000.000
20A395VAL0-0.0040.00321.479-0.468-0.4680.0000.0000.0000.000
21A396LEU0-0.0050.00120.179-0.697-0.6970.0000.0000.0000.000
22A397LYS10.8460.91220.45810.93110.9310.0000.0000.0000.000
23A398PHE00.0240.01618.422-0.323-0.3230.0000.0000.0000.000
24A399ALA00.0320.01216.686-0.596-0.5960.0000.0000.0000.000
25A400GLN0-0.017-0.01215.865-0.471-0.4710.0000.0000.0000.000
26A401PHE0-0.0070.00516.602-0.276-0.2760.0000.0000.0000.000
27A402LEU00.0210.00813.696-0.303-0.3030.0000.0000.0000.000
28A403LEU00.0200.02510.818-0.766-0.7660.0000.0000.0000.000
29A404THR0-0.059-0.05112.562-0.260-0.2600.0000.0000.0000.000
30A405ALA0-0.092-0.04415.2290.3200.3200.0000.0000.0000.000
31A406CYS0-0.051-0.02012.9560.4390.4390.0000.0000.0000.000
32A407GLY00.0120.0229.698-1.190-1.1900.0000.0000.0000.000
33A408THR0-0.091-0.0458.091-2.176-2.1760.0000.0000.0000.000
34A409GLU-1-0.914-0.9655.701-35.824-35.8240.0000.0000.0000.000
35A410VAL0-0.011-0.0249.183-0.257-0.2570.0000.0000.0000.000
36A411ALA0-0.0120.01112.1250.0520.0520.0000.0000.0000.000
37A412LEU00.015-0.02313.5700.8200.8200.0000.0000.0000.000
38A413ASP-1-0.768-0.86317.185-13.808-13.8080.0000.0000.0000.000
39A414LEU00.0110.00820.1500.1710.1710.0000.0000.0000.000
40A415LEU0-0.085-0.04315.6570.4330.4330.0000.0000.0000.000
41A416GLU-1-0.901-0.95215.031-20.731-20.7310.0000.0000.0000.000
42A417GLU-1-0.856-0.93719.594-12.497-12.4970.0000.0000.0000.000
43A418GLN0-0.088-0.05521.8760.5350.5350.0000.0000.0000.000
44A419ALA00.0350.01318.6460.1950.1950.0000.0000.0000.000
45A420ILE0-0.063-0.04320.5960.2680.2680.0000.0000.0000.000
46A421SER0-0.042-0.01922.6180.6350.6350.0000.0000.0000.000
47A422GLU-1-0.927-0.92622.815-13.162-13.1620.0000.0000.0000.000
48A423ALA0-0.062-0.02920.8300.1470.1470.0000.0000.0000.000
49A424GLY00.0590.02522.8520.3170.3170.0000.0000.0000.000
50A425VAL00.1020.04122.930-0.610-0.6100.0000.0000.0000.000
51A426MET0-0.032-0.01823.034-0.365-0.3650.0000.0000.0000.000
52A427THR0-0.041-0.01919.733-0.298-0.2980.0000.0000.0000.000
53A428TRP0-0.0120.00117.097-0.478-0.4780.0000.0000.0000.000
54A429VAL00.0580.03117.880-1.002-1.0020.0000.0000.0000.000
55A430GLY0-0.042-0.03418.329-0.583-0.5830.0000.0000.0000.000
56A431ARG10.9540.98513.87118.38818.3880.0000.0000.0000.000
57A432GLN00.0240.01813.714-2.588-2.5880.0000.0000.0000.000
58A433LYS10.8450.91613.63014.43914.4390.0000.0000.0000.000
59A434GLN0-0.041-0.01512.528-0.934-0.9340.0000.0000.0000.000
60A435GLU-1-0.860-0.9319.410-29.302-29.3020.0000.0000.0000.000
61A436MET0-0.057-0.0099.312-3.310-3.3100.0000.0000.0000.000
62A437VAL0-0.037-0.02510.904-0.950-0.9500.0000.0000.0000.000
63A438GLU-1-0.966-0.9728.575-29.923-29.9230.0000.0000.0000.000
64A439SER0-0.081-0.0406.081-2.399-2.3990.0000.0000.0000.000
65A440ASN0-0.023-0.0097.853-0.129-0.1290.0000.0000.0000.000
66A441SER0-0.039-0.0167.7800.6600.6600.0000.0000.0000.000
67A442LYS10.8610.93910.07124.05024.0500.0000.0000.0000.000
68A443ILE00.005-0.00213.095-0.558-0.5580.0000.0000.0000.000
69A444ILE0-0.032-0.01515.0540.8940.8940.0000.0000.0000.000
70A445VAL00.0060.00017.8830.1020.1020.0000.0000.0000.000
71A446LEU0-0.035-0.02321.0360.4030.4030.0000.0000.0000.000
72A447CYS0-0.060-0.03323.3900.2370.2370.0000.0000.0000.000
73A448SER00.025-0.02227.046-0.023-0.0230.0000.0000.0000.000
74A449ARG10.9400.98830.0968.3358.3350.0000.0000.0000.000
75A450GLY00.023-0.00331.7360.2120.2120.0000.0000.0000.000
76A451THR00.0030.01526.880-0.016-0.0160.0000.0000.0000.000
77A452ARG10.8630.95130.2128.7188.7180.0000.0000.0000.000
78A453ALA0-0.052-0.03333.4130.1590.1590.0000.0000.0000.000
79A454LYS10.8360.90029.45910.55110.5510.0000.0000.0000.000
80A455TRP0-0.0020.00431.032-0.115-0.1150.0000.0000.0000.000
81A456GLN00.002-0.01533.0820.3180.3180.0000.0000.0000.000
82A457ALA0-0.0050.01635.7240.1900.1900.0000.0000.0000.000
83A458LEU0-0.019-0.00230.4720.1230.1230.0000.0000.0000.000
84A459LEU0-0.082-0.03035.0900.1310.1310.0000.0000.0000.000
85A460GLY0-0.017-0.00937.5070.2320.2320.0000.0000.0000.000
86A461ARG10.8750.93239.8048.0518.0510.0000.0000.0000.000
87A462GLY00.0150.01140.3170.1210.1210.0000.0000.0000.000
88A463ALA0-0.026-0.00740.468-0.088-0.0880.0000.0000.0000.000
89A464PRO00.0300.00238.147-0.179-0.1790.0000.0000.0000.000
90A465VAL00.0010.01034.7330.1570.1570.0000.0000.0000.000
91A466ARG10.9220.96836.0607.8857.8850.0000.0000.0000.000
92A467LEU00.0330.02731.8210.2530.2530.0000.0000.0000.000
93A468ARG10.8760.93634.3857.6417.6410.0000.0000.0000.000
94A469CYS0-0.023-0.00630.096-0.073-0.0730.0000.0000.0000.000
95A470ASP-1-0.847-0.90129.512-10.829-10.8290.0000.0000.0000.000
96A471HIS00.017-0.01931.2900.0780.0780.0000.0000.0000.000
97A472GLY0-0.0230.00634.1370.2950.2950.0000.0000.0000.000
98A473LYS10.8630.94126.90811.31611.3160.0000.0000.0000.000
99A474PRO00.002-0.01131.4480.0060.0060.0000.0000.0000.000
100A475VAL0-0.0010.02126.6080.0570.0570.0000.0000.0000.000
101A476GLY0-0.009-0.00828.427-0.108-0.1080.0000.0000.0000.000
102A477ASP-1-0.804-0.92528.849-10.888-10.8880.0000.0000.0000.000
103A478LEU00.0820.03622.505-0.085-0.0850.0000.0000.0000.000
104A479PHE0-0.0290.01124.709-0.338-0.3380.0000.0000.0000.000
105A480THR00.014-0.01226.140-0.129-0.1290.0000.0000.0000.000
106A481ALA0-0.017-0.00425.327-0.051-0.0510.0000.0000.0000.000
107A482ALA00.0480.00621.965-0.300-0.3000.0000.0000.0000.000
108A483MET0-0.020-0.00623.570-0.426-0.4260.0000.0000.0000.000
109A484ASN0-0.018-0.01326.1630.2330.2330.0000.0000.0000.000
110A485MET0-0.0350.00220.491-0.062-0.0620.0000.0000.0000.000
111A486ILE0-0.006-0.01120.310-0.264-0.2640.0000.0000.0000.000
112A487LEU00.0340.04222.8790.0600.0600.0000.0000.0000.000
113A488PRO0-0.060-0.04124.1990.2780.2780.0000.0000.0000.000
114A489ASP-1-0.762-0.87220.464-15.162-15.1620.0000.0000.0000.000
115A490PHE00.022-0.01222.783-0.090-0.0900.0000.0000.0000.000
116A491LYS10.9520.97826.57811.09811.0980.0000.0000.0000.000
117A492ARG10.8690.93223.96212.73212.7320.0000.0000.0000.000
118A493PRO00.1020.03424.227-0.501-0.5010.0000.0000.0000.000
119A494ALA0-0.037-0.01821.364-0.254-0.2540.0000.0000.0000.000
120A495CYS0-0.018-0.00419.830-0.842-0.8420.0000.0000.0000.000
121A496PHE00.0240.04120.126-0.368-0.3680.0000.0000.0000.000
122A497GLY00.0330.02218.7770.0270.0270.0000.0000.0000.000
123A498THR00.0190.01315.177-0.959-0.9590.0000.0000.0000.000
124A499TYR0-0.040-0.03216.324-0.628-0.6280.0000.0000.0000.000
125A500VAL0-0.011-0.00616.6740.4750.4750.0000.0000.0000.000
126A501VAL00.0360.02319.577-0.019-0.0190.0000.0000.0000.000
127A502CYS0-0.0070.01721.1570.2150.2150.0000.0000.0000.000
128A503TYR00.0590.03424.0330.1810.1810.0000.0000.0000.000
129A504PHE00.0270.00922.6430.0090.0090.0000.0000.0000.000
130A505SER00.0210.00527.8070.1980.1980.0000.0000.0000.000
131A506GLU-1-0.835-0.89030.705-8.826-8.8260.0000.0000.0000.000
132A507VAL0-0.025-0.00529.9250.2060.2060.0000.0000.0000.000
133A508SER0-0.035-0.01330.119-0.057-0.0570.0000.0000.0000.000
134A509CYS0-0.061-0.02432.2620.1640.1640.0000.0000.0000.000
135A510ASP-1-0.805-0.90231.650-9.573-9.5730.0000.0000.0000.000
136A511GLY00.0210.00332.615-0.115-0.1150.0000.0000.0000.000
137A512ASP-1-0.840-0.94731.330-8.965-8.9650.0000.0000.0000.000
138A513VAL0-0.037-0.02528.030-0.290-0.2900.0000.0000.0000.000
139A514PRO0-0.023-0.01128.3530.2950.2950.0000.0000.0000.000
140A515ASP-1-0.871-0.94030.170-9.455-9.4550.0000.0000.0000.000
141A516LEU0-0.0070.00326.845-0.015-0.0150.0000.0000.0000.000
142A517PHE0-0.006-0.01724.152-0.280-0.2800.0000.0000.0000.000
143A518GLY00.0000.00327.976-0.098-0.0980.0000.0000.0000.000
144A519ALA0-0.052-0.02529.7340.0560.0560.0000.0000.0000.000
145A520ALA0-0.0260.00524.605-0.181-0.1810.0000.0000.0000.000
146A521PRO0-0.025-0.01923.6620.3060.3060.0000.0000.0000.000
147A522ARG10.9230.96224.9379.5969.5960.0000.0000.0000.000
148A523TYR00.007-0.02021.589-0.116-0.1160.0000.0000.0000.000
149A524PRO00.0200.01625.336-0.156-0.1560.0000.0000.0000.000
150A525LEU0-0.0090.02221.792-0.190-0.1900.0000.0000.0000.000
151A526MET0-0.001-0.02722.0450.2040.2040.0000.0000.0000.000
152A527ASP-1-0.888-0.93425.466-9.815-9.8150.0000.0000.0000.000
153A528ARG10.8900.94925.13210.24010.2400.0000.0000.0000.000
154A529PHE00.002-0.02616.906-0.443-0.4430.0000.0000.0000.000
155A530GLU-1-0.939-0.95820.067-12.433-12.4330.0000.0000.0000.000
156A531GLU-1-0.835-0.93519.801-12.040-12.0400.0000.0000.0000.000
157A532VAL0-0.030-0.01417.318-0.629-0.6290.0000.0000.0000.000
158A533TYR0-0.040-0.01913.509-1.356-1.3560.0000.0000.0000.000
159A534PHE00.0810.02714.975-1.202-1.2020.0000.0000.0000.000
160A535ARG10.8330.91815.16014.60414.6040.0000.0000.0000.000
161A536ILE0-0.078-0.04110.989-1.126-1.1260.0000.0000.0000.000
162A537GLN0-0.045-0.0339.961-3.127-3.1270.0000.0000.0000.000
163A538ASP-1-1.032-0.98411.261-22.719-22.7190.0000.0000.0000.000
164A539LEU0-0.032-0.02013.0380.0140.0140.0000.0000.0000.000
165A540GLU-1-0.966-0.97515.708-12.346-12.3460.0000.0000.0000.000
166A556ASP-1-0.824-0.92028.243-9.542-9.5420.0000.0000.0000.000
167A557ASN00.041-0.01124.9690.2490.2490.0000.0000.0000.000
168A558TYR00.0210.01722.533-0.072-0.0720.0000.0000.0000.000
169A559LEU00.0090.01223.617-0.216-0.2160.0000.0000.0000.000
170A560ARG10.8580.92824.66810.68010.6800.0000.0000.0000.000
171A561SER0-0.0150.00819.800-0.248-0.2480.0000.0000.0000.000
172A562PRO00.0370.01018.4350.4110.4110.0000.0000.0000.000
173A563GLY00.0600.02719.499-0.505-0.5050.0000.0000.0000.000
174A564GLY00.0190.01221.4530.0700.0700.0000.0000.0000.000
175A565ARG10.9500.96123.4579.9559.9550.0000.0000.0000.000
176A566GLN00.0400.03123.7560.3130.3130.0000.0000.0000.000
177A567LEU00.0180.02222.1390.1980.1980.0000.0000.0000.000
178A568ARG10.8660.92425.1519.4359.4350.0000.0000.0000.000
179A569ALA00.0040.01128.2960.2780.2780.0000.0000.0000.000
180A570ALA0-0.015-0.01227.2370.2670.2670.0000.0000.0000.000
181A571LEU0-0.022-0.01726.4960.1580.1580.0000.0000.0000.000
182A572ASP-1-0.801-0.89530.140-8.605-8.6050.0000.0000.0000.000
183A573ARG10.9390.97232.7339.0109.0100.0000.0000.0000.000
184A574PHE0-0.028-0.02031.2200.2260.2260.0000.0000.0000.000
185A575ARG10.9010.93433.8188.4248.4240.0000.0000.0000.000
186A576ASP-1-0.908-0.95935.621-7.641-7.6410.0000.0000.0000.000
187A577TRP0-0.046-0.02736.9000.3170.3170.0000.0000.0000.000
188A578GLN0-0.014-0.02034.2410.2830.2830.0000.0000.0000.000
189A579VAL0-0.0190.00538.9590.1730.1730.0000.0000.0000.000
190A580ARG10.8840.93641.6347.1447.1440.0000.0000.0000.000
191A581CYS0-0.102-0.04941.3960.2030.2030.0000.0000.0000.000
192A582PRO00.0510.02641.322-0.211-0.2110.0000.0000.0000.000
193A583ASP-1-0.891-0.92742.171-6.933-6.9330.0000.0000.0000.000
194A584TRP0-0.049-0.04333.688-0.190-0.1900.0000.0000.0000.000
195A585PHE0-0.024-0.01034.180-0.122-0.1220.0000.0000.0000.000
196A586GLU-1-0.840-0.94438.286-7.690-7.6900.0000.0000.0000.000
197A587CYS0-0.045-0.00741.1830.1250.1250.0000.0000.0000.000
198A588GLU-1-0.893-0.95935.672-8.532-8.5320.0000.0000.0000.000
199A589ASN0-0.0060.00537.626-0.288-0.2880.0000.0000.0000.000
200A590LEU0-0.024-0.01738.7220.2780.2780.0000.0000.0000.000
201A591TYR0-0.004-0.00241.001-0.035-0.0350.0000.0000.0000.000