FMODB

FMODB: The database of quantum mechanical data based on the FMO method

Last updated: 2025-10-17

All entries: 77277

Number of unique PDB entries: 32023

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FMODB ID: ZZGLN

Calculation Name: 3E5U-C-Xray547

Preferred Name:

Target Type:

Ligand Name: (3-chloro-4-hydroxyphenyl)acetic acid | phosphate ion

Ligand 3-letter code: 3C4 | PO4

Ligand of Interest (LOI):

Structure Source: PDB

PDB ID: 3E5U

Chain ID: C

ChEMBL ID:

UniProt ID: B8FW11

Base Structure: X-ray

Registration Date: 2025-10-05

Reference: Sci Data 11, 1164 (2024).

DOI: https://doi.org/10.1038/s41597-024-03999-2

Apendix: None


IFIE MAP

IFIE Diagram


Modeling method
Optimization MOE:Amber10:EHT
Restraint OptAll
Protonation MOE:Protonate 3D
Complement MOE:Homology Modeling
Water No
Procedure Manual calculation
Remarks
ac.sh, 23 2024 Oct; Missing atoms/residues were imported from a 100% homology model, which was constructed by MOE.
FMO calculation
FMO method FMO2-MP2/6-31G(d)
Fragmentation Auto
Number of fragment 219
LigandResidueName
LigandFragmentNumber 0
LigandCharge
Software ABINIT-MP - Open Ver. 1 Rev. 23 (BINDS Ver. 1) / 20230922
Total energy (hartree)
FMO2-HF: Electronic energy -2609052.05054
FMO2-HF: Nuclear repulsion 2520762.288773
FMO2-HF: Total energy -88289.761767
FMO2-MP2: Total energy -88545.180102


3D Structure Molmil
Snapshot
 
Ligand structure

ligand structure
Ligand Interaction
ligand interaction
Ligand binding energy
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
N/AN/AN/AN/AN/AN/A


Interactive mode: IFIE and PIEDA for fragment #1(A:9:ASP)


Summations of interaction energy for fragment #1(A:9:ASP)
IFIE [kcal/mol] PIEDA [kcal/mol] Charge transfer value [e]
IFIE SUMIFIE SUM at MP2 level. ESElectro static interaction energy. EXExchange-repulsion energy. CT+mixCharge transfer and mixing terms energy. DI(MP2)Dispersion energy. q(I=>J)Charge transfer value from I to J fragments.
-28.033-29.21114.497-6.482-6.8390.052
Interaction energy analysis for fragmet #1(A:9:ASP)
Snapshot

IFIE Diagram

Base fragment(s) of PIEDA/IFIE
Single fragment Multi fragments
Fragment list
Charge [e] FCHARGE : 0 / q_Mulliken : 0.008 / q_NPA : 0.005
Distance from base fragment(s) [Å]
Dist
Interaction energy by IFIE and PIEDA
[kcal/mol]
| Total | > | ES | > | EX | >
| CT+mix | > | DI(MP2) | >
Fragment charge [e]
FCHARGE q_Mulliken
q_NPA q(I=>J)
Residue
Res #    RES   
Sort
Graph Options
X Axis Label
Y Axis Max Y Axis Min
Display   
frag_NumFragment number. ChainChain species. Res #Residue number. RES3-letter code of amino acid residue, ligand and solvent molecule. FCHARGEFormal charge [e]. q_MullikenFragment charge evaluated by Mulliken charge [e]. q_NPAFragment charge evaluated by natural population analysis(NPA) charge [e]. DISTDistance from Ligand [Å]. TotalIFIE at MP2 level [kcal/mol]. ESElectro static interaction energy by PIEDA [kcal/mol]. EXExchange-repulsion energy by PIEDA [kcal/mol]. CT+mixCharge transfer and mixing terms energy by PIEDA [kcal/mol]. DI(MP2)Dispersion energy by PIEDA [kcal/mol]. q(I=>J)Charge transfer value from I to J fragmens [e].
3A11CYS0-0.0020.0133.510-3.530-1.3520.003-1.068-1.1130.002
12A20PHE0-0.045-0.0172.670-0.4740.2970.086-0.258-0.600-0.003
117A125GLU-1-0.818-0.9034.9814.3934.647-0.001-0.006-0.2470.000
120A128LYS10.8300.8941.745-39.748-44.12914.409-5.150-4.8790.053
4A12GLY00.0220.0176.0602.7082.7080.0000.0000.0000.000
5A13ALA0-0.023-0.0198.944-0.687-0.6870.0000.0000.0000.000
6A14ILE00.0070.00011.7070.3620.3620.0000.0000.0000.000
7A15ILE00.000-0.00715.0700.3940.3940.0000.0000.0000.000
8A16PRO00.0090.02315.201-0.326-0.3260.0000.0000.0000.000
9A17ASP-1-0.860-0.96115.556-1.758-1.7580.0000.0000.0000.000
10A18ASN0-0.069-0.02313.281-0.274-0.2740.0000.0000.0000.000
11A19PHE00.0170.00811.040-0.576-0.5760.0000.0000.0000.000
13A21PRO00.0500.0277.9460.8350.8350.0000.0000.0000.000
14A22ILE0-0.0040.0068.328-0.630-0.6300.0000.0000.0000.000
15A23GLU-1-0.920-0.97310.009-0.221-0.2210.0000.0000.0000.000
16A24LYS10.9240.94611.165-1.872-1.8720.0000.0000.0000.000
17A25LEU00.0240.00613.0710.2720.2720.0000.0000.0000.000
18A26ARG10.8020.88315.1551.0771.0770.0000.0000.0000.000
19A27ASN0-0.0010.01215.763-0.100-0.1000.0000.0000.0000.000
20A28TYR0-0.017-0.04514.5540.0490.0490.0000.0000.0000.000
21A29THR0-0.021-0.02119.297-0.015-0.0150.0000.0000.0000.000
22A30GLN0-0.016-0.01721.397-0.076-0.0760.0000.0000.0000.000
23A31MET0-0.050-0.01620.8090.0530.0530.0000.0000.0000.000
24A32GLY0-0.037-0.01523.0700.0240.0240.0000.0000.0000.000
25A33LEU0-0.027-0.01723.9690.0010.0010.0000.0000.0000.000
26A34ILE00.0230.00624.142-0.058-0.0580.0000.0000.0000.000
27A35ARG10.9060.97225.9710.3110.3110.0000.0000.0000.000
28A36ASP-1-0.750-0.82326.438-0.441-0.4410.0000.0000.0000.000
29A37PHE0-0.007-0.00426.3970.0280.0280.0000.0000.0000.000
30A38ALA00.0430.02729.287-0.036-0.0360.0000.0000.0000.000
31A39LYS10.9250.96530.1030.6200.6200.0000.0000.0000.000
32A40GLY0-0.014-0.01030.5720.0360.0360.0000.0000.0000.000
33A41SER0-0.037-0.01930.6580.0330.0330.0000.0000.0000.000
34A42ALA0-0.004-0.00429.732-0.051-0.0510.0000.0000.0000.000
35A43VAL0-0.066-0.03824.1640.0270.0270.0000.0000.0000.000
36A44ILE00.0000.00023.4350.0180.0180.0000.0000.0000.000
37A45MET00.000-0.00827.816-0.024-0.0240.0000.0000.0000.000
38A46PRO00.0200.00830.9960.0030.0030.0000.0000.0000.000
39A47GLY00.0090.01331.9710.0290.0290.0000.0000.0000.000
40A48GLU-1-0.917-0.95030.089-0.304-0.3040.0000.0000.0000.000
41A49GLU-1-0.783-0.89127.129-0.346-0.3460.0000.0000.0000.000
42A50ILE0-0.085-0.03924.0040.0230.0230.0000.0000.0000.000
43A51THR00.005-0.00224.9350.0230.0230.0000.0000.0000.000
44A52SER0-0.073-0.05822.7850.0790.0790.0000.0000.0000.000
45A53MET0-0.0600.00415.566-0.114-0.1140.0000.0000.0000.000
46A54ILE00.0160.01819.4880.0500.0500.0000.0000.0000.000
47A55PHE00.0140.01013.683-0.118-0.1180.0000.0000.0000.000
48A56LEU0-0.0010.00017.1040.1310.1310.0000.0000.0000.000
49A57VAL00.0080.00617.591-0.124-0.1240.0000.0000.0000.000
50A58GLU-1-0.945-0.98219.655-0.730-0.7300.0000.0000.0000.000
51A59GLY00.0580.04721.4580.0670.0670.0000.0000.0000.000
52A60LYS10.9100.95020.9951.0661.0660.0000.0000.0000.000
53A61ILE0-0.0070.00121.1500.1160.1160.0000.0000.0000.000
54A62LYS10.7730.88721.6220.7390.7390.0000.0000.0000.000
55A63LEU0-0.015-0.00420.4930.0980.0980.0000.0000.0000.000
56A64ASP-1-0.689-0.85023.144-0.949-0.9490.0000.0000.0000.000
57A65ILE0-0.019-0.01225.7920.0280.0280.0000.0000.0000.000
58A66ILE0-0.027-0.01427.465-0.006-0.0060.0000.0000.0000.000
59A67PHE0-0.014-0.00728.7320.0070.0070.0000.0000.0000.000
60A68GLU-1-0.881-0.95433.232-0.336-0.3360.0000.0000.0000.000
61A69ASP-1-0.868-0.90636.417-0.376-0.3760.0000.0000.0000.000
62A70GLY0-0.019-0.00636.2370.0060.0060.0000.0000.0000.000
63A71SER0-0.116-0.07034.683-0.038-0.0380.0000.0000.0000.000
64A72GLU-1-0.875-0.94430.184-0.590-0.5900.0000.0000.0000.000
65A73LYS10.8420.90627.1450.6190.6190.0000.0000.0000.000
66A74LEU0-0.0260.01022.1750.0030.0030.0000.0000.0000.000
67A75LEU0-0.0190.00520.958-0.006-0.0060.0000.0000.0000.000
68A76TYR0-0.026-0.02817.329-0.158-0.1580.0000.0000.0000.000
69A77TYR0-0.071-0.02719.0170.2120.2120.0000.0000.0000.000
70A78ALA00.0150.00116.855-0.240-0.2400.0000.0000.0000.000
71A79GLY00.0600.04216.7210.2300.2300.0000.0000.0000.000
72A80GLY00.0360.01216.643-0.063-0.0630.0000.0000.0000.000
73A81ASN00.0320.01712.3430.0270.0270.0000.0000.0000.000
74A82SER00.0010.01012.656-0.380-0.3800.0000.0000.0000.000
75A83LEU00.0090.00812.9050.3270.3270.0000.0000.0000.000
76A84ILE00.0010.00314.903-0.201-0.2010.0000.0000.0000.000
77A85GLY00.0450.02416.5020.1540.1540.0000.0000.0000.000
78A86LYS10.8640.93417.3490.5420.5420.0000.0000.0000.000
79A87LEU00.0140.00919.0780.0510.0510.0000.0000.0000.000
80A88TYR0-0.043-0.05220.1260.0800.0800.0000.0000.0000.000
81A89PRO00.0340.01223.787-0.064-0.0640.0000.0000.0000.000
82A90THR0-0.035-0.02022.449-0.013-0.0130.0000.0000.0000.000
83A91GLY0-0.0190.01225.500-0.013-0.0130.0000.0000.0000.000
84A92ASN0-0.018-0.01524.0750.0200.0200.0000.0000.0000.000
85A93ASN00.0350.02227.6050.0020.0020.0000.0000.0000.000
86A94ILE0-0.016-0.02024.267-0.050-0.0500.0000.0000.0000.000
87A95TYR00.0070.01927.2990.0500.0500.0000.0000.0000.000
88A96ALA00.009-0.00324.256-0.080-0.0800.0000.0000.0000.000
89A97THR00.0380.02526.2030.0600.0600.0000.0000.0000.000
90A98ALA00.0380.01925.917-0.088-0.0880.0000.0000.0000.000
91A99MET0-0.054-0.02925.2360.0630.0630.0000.0000.0000.000
92A100GLU-1-0.946-0.99124.209-0.996-0.9960.0000.0000.0000.000
93A101PRO0-0.005-0.00427.5320.0150.0150.0000.0000.0000.000
94A102THR0-0.010-0.01423.094-0.082-0.0820.0000.0000.0000.000
95A103ARG10.8460.90023.7950.4540.4540.0000.0000.0000.000
96A104THR0-0.027-0.02821.871-0.078-0.0780.0000.0000.0000.000
97A105CYS0-0.0100.01020.3810.1020.1020.0000.0000.0000.000
98A106TRP0-0.022-0.00520.925-0.038-0.0380.0000.0000.0000.000
99A107PHE00.0640.01418.2540.0760.0760.0000.0000.0000.000
100A108SER00.0740.04621.5660.0090.0090.0000.0000.0000.000
101A109GLU-1-0.725-0.81321.9350.4520.4520.0000.0000.0000.000
102A110LYS10.9530.96422.656-0.167-0.1670.0000.0000.0000.000
103A111SER00.0060.01022.6260.0460.0460.0000.0000.0000.000
104A112LEU00.0540.02317.0370.0750.0750.0000.0000.0000.000
105A113ARG10.8240.88518.922-0.428-0.4280.0000.0000.0000.000
106A114THR0-0.055-0.02621.2450.0990.0990.0000.0000.0000.000
107A115VAL00.0460.01715.7190.0690.0690.0000.0000.0000.000
108A116PHE0-0.021-0.02214.1780.1420.1420.0000.0000.0000.000
109A117ARG10.9100.96416.990-0.633-0.6330.0000.0000.0000.000
110A118THR0-0.052-0.01618.619-0.046-0.0460.0000.0000.0000.000
111A119ASP-1-0.750-0.85113.2472.1672.1670.0000.0000.0000.000
112A120GLU-1-0.891-0.94612.2773.3503.3500.0000.0000.0000.000
113A121ASP-1-0.859-0.9248.8145.5865.5860.0000.0000.0000.000
114A122MET0-0.085-0.0468.786-0.011-0.0110.0000.0000.0000.000
115A123ILE0-0.0160.00311.273-0.651-0.6510.0000.0000.0000.000
116A124PHE00.0260.0126.418-0.181-0.1810.0000.0000.0000.000
118A126ILE00.0210.0017.449-1.879-1.8790.0000.0000.0000.000
119A127PHE0-0.028-0.0158.091-0.680-0.6800.0000.0000.0000.000
121A129ASN0-0.024-0.0035.995-0.926-0.9260.0000.0000.0000.000
122A130TYR0-0.026-0.0289.130-0.063-0.0630.0000.0000.0000.000
123A131LEU00.0010.0006.165-0.104-0.1040.0000.0000.0000.000
124A132THR0-0.015-0.0237.224-0.668-0.6680.0000.0000.0000.000
125A133LYS10.8270.9229.4692.2772.2770.0000.0000.0000.000
126A134VAL00.0020.00112.6670.2000.2000.0000.0000.0000.000
127A135ALA0-0.002-0.00110.9910.2370.2370.0000.0000.0000.000
128A136TYR0-0.022-0.00612.9440.2250.2250.0000.0000.0000.000
129A137TYR00.020-0.02514.8870.1640.1640.0000.0000.0000.000
130A138ALA00.0090.01516.4860.1710.1710.0000.0000.0000.000
131A139ARG10.8880.94315.7562.0932.0930.0000.0000.0000.000
132A140GLN00.0060.00218.2870.1060.1060.0000.0000.0000.000
133A141VAL00.0270.00720.7530.1140.1140.0000.0000.0000.000
134A142ALA00.0130.01421.2190.1000.1000.0000.0000.0000.000
135A143GLU-1-0.835-0.90621.809-1.253-1.2530.0000.0000.0000.000
136A144MET0-0.065-0.04323.7570.0580.0580.0000.0000.0000.000
137A145ASN0-0.058-0.02326.3220.1020.1020.0000.0000.0000.000
138A146THR0-0.040-0.01125.7880.0650.0650.0000.0000.0000.000
139A147TYR00.0260.00723.8490.0060.0060.0000.0000.0000.000
140A148ASN00.0540.04028.361-0.032-0.0320.0000.0000.0000.000
141A149PRO00.051-0.00729.660-0.046-0.0460.0000.0000.0000.000
142A150THR0-0.063-0.04329.549-0.037-0.0370.0000.0000.0000.000
143A151ILE00.0900.04827.533-0.044-0.0440.0000.0000.0000.000
144A152ARG10.8470.92525.0460.8130.8130.0000.0000.0000.000
145A153ILE0-0.057-0.01824.728-0.095-0.0950.0000.0000.0000.000
146A154LEU0-0.020-0.00625.630-0.082-0.0820.0000.0000.0000.000
147A155ARG10.8440.90920.6311.2471.2470.0000.0000.0000.000
148A156LEU00.0080.01819.831-0.137-0.1370.0000.0000.0000.000
149A157PHE0-0.010-0.02920.837-0.137-0.1370.0000.0000.0000.000
150A158TYR00.0850.05220.662-0.046-0.0460.0000.0000.0000.000
151A159GLU-1-0.798-0.88117.394-2.028-2.0280.0000.0000.0000.000
152A160LEU0-0.0110.00016.825-0.281-0.2810.0000.0000.0000.000
153A161CYS0-0.052-0.02618.183-0.096-0.0960.0000.0000.0000.000
154A162SER0-0.008-0.02017.5020.0080.0080.0000.0000.0000.000
155A163SER0-0.054-0.03113.359-0.166-0.1660.0000.0000.0000.000
156A164GLN0-0.056-0.02813.991-0.122-0.1220.0000.0000.0000.000
157A165GLY00.0030.00816.4710.1740.1740.0000.0000.0000.000
158A166LYS10.9150.95517.5701.9311.9310.0000.0000.0000.000
159A167ARG10.9740.99321.3861.0371.0370.0000.0000.0000.000
160A168VAL0-0.020-0.00524.2350.0230.0230.0000.0000.0000.000
161A169GLY00.0270.02627.6030.0360.0360.0000.0000.0000.000
162A170ASP-1-0.913-0.96028.954-0.674-0.6740.0000.0000.0000.000
163A171THR0-0.096-0.04428.632-0.037-0.0370.0000.0000.0000.000
164A172TYR00.018-0.00422.512-0.058-0.0580.0000.0000.0000.000
165A173GLU-1-0.797-0.88724.250-0.971-0.9710.0000.0000.0000.000
166A174ILE00.0280.02419.711-0.112-0.1120.0000.0000.0000.000
167A175THR0-0.030-0.03021.2100.1630.1630.0000.0000.0000.000
168A176MET00.0560.03119.786-0.140-0.1400.0000.0000.0000.000
169A177PRO0-0.012-0.00122.0880.0950.0950.0000.0000.0000.000
170A178LEU00.0410.04221.8360.0110.0110.0000.0000.0000.000
171A179SER00.0160.00724.5700.0810.0810.0000.0000.0000.000
172A180GLN00.033-0.00227.295-0.031-0.0310.0000.0000.0000.000
173A181LYS10.8950.94229.4570.7740.7740.0000.0000.0000.000
174A182SER00.0390.01224.006-0.006-0.0060.0000.0000.0000.000
175A183ILE00.0290.01224.956-0.041-0.0410.0000.0000.0000.000
176A184GLY00.0080.02926.161-0.013-0.0130.0000.0000.0000.000
177A185GLU-1-0.852-0.92925.306-0.937-0.9370.0000.0000.0000.000
178A186ILE0-0.0060.00720.681-0.021-0.0210.0000.0000.0000.000
179A187THR0-0.018-0.02823.1270.0000.0000.0000.0000.0000.000
180A188GLY00.0690.05225.1940.0500.0500.0000.0000.0000.000
181A189VAL0-0.071-0.03327.8530.0680.0680.0000.0000.0000.000
182A190HIS00.0660.02830.790-0.031-0.0310.0000.0000.0000.000
183A191HIS00.0850.02433.402-0.037-0.0370.0000.0000.0000.000
184A192VAL00.0310.02534.392-0.012-0.0120.0000.0000.0000.000
185A193THR0-0.017-0.01832.8260.0250.0250.0000.0000.0000.000
186A194VAL00.0150.01429.906-0.009-0.0090.0000.0000.0000.000
187A195SER0-0.018-0.02132.302-0.012-0.0120.0000.0000.0000.000
188A196ARG10.9610.99235.2460.5530.5530.0000.0000.0000.000
189A197VAL00.0360.03530.8370.0190.0190.0000.0000.0000.000
190A198LEU0-0.0010.00129.215-0.008-0.0080.0000.0000.0000.000
191A199ALA0-0.021-0.01633.0240.0060.0060.0000.0000.0000.000
192A200SER0-0.055-0.03935.8850.0420.0420.0000.0000.0000.000
193A201LEU00.0690.03329.5920.0080.0080.0000.0000.0000.000
194A202LYS10.8620.93333.6840.6500.6500.0000.0000.0000.000
195A203ARG10.8280.92335.4050.5350.5350.0000.0000.0000.000
196A204GLU-1-0.849-0.93536.213-0.548-0.5480.0000.0000.0000.000
197A205ASN0-0.056-0.01835.3140.0050.0050.0000.0000.0000.000
198A206ILE00.0260.02430.126-0.020-0.0200.0000.0000.0000.000
199A207LEU0-0.019-0.02826.505-0.063-0.0630.0000.0000.0000.000
200A208ASP-1-0.828-0.90330.426-0.678-0.6780.0000.0000.0000.000
201A209LYS10.8460.92426.8910.9190.9190.0000.0000.0000.000
202A210LYS10.9480.98529.4720.7860.7860.0000.0000.0000.000
203A211LYS10.9330.97029.1630.6880.6880.0000.0000.0000.000
204A212ASN00.016-0.02126.875-0.026-0.0260.0000.0000.0000.000
205A213LYS10.8340.92125.0270.8770.8770.0000.0000.0000.000
206A214ILE0-0.022-0.00523.1560.1000.1000.0000.0000.0000.000
207A215ILE0-0.0170.00425.574-0.070-0.0700.0000.0000.0000.000
208A216VAL00.0300.00724.8570.0490.0490.0000.0000.0000.000
209A217TYR00.000-0.02027.775-0.010-0.0100.0000.0000.0000.000
210A218ASN00.0480.03030.2390.0000.0000.0000.0000.0000.000
211A219LEU00.0230.00623.028-0.007-0.0070.0000.0000.0000.000
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